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All results from a given calculation for C5H4N4 (purine)

using model chemistry: wB97X-D/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at wB97X-D/cc-pVDZ
 hartrees
Energy at 0K-411.827895
Energy at 298.15K-411.835809
HF Energy-411.827895
Nuclear repulsion energy413.136574
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at wB97X-D/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3715 3539 105.53      
2 A' 3287 3131 0.55      
3 A' 3226 3073 10.91      
4 A' 3217 3065 11.92      
5 A' 1698 1617 75.87      
6 A' 1660 1581 98.56      
7 A' 1567 1493 37.84      
8 A' 1519 1447 4.01      
9 A' 1461 1392 87.72      
10 A' 1442 1374 22.41      
11 A' 1391 1325 52.15      
12 A' 1337 1274 13.50      
13 A' 1320 1258 7.97      
14 A' 1295 1234 41.80      
15 A' 1220 1162 6.53      
16 A' 1155 1100 8.61      
17 A' 1104 1051 17.19      
18 A' 955 910 0.47      
19 A' 922 878 11.24      
20 A' 818 779 13.88      
21 A' 665 634 0.16      
22 A' 575 548 3.20      
23 A' 449 428 13.72      
24 A" 998 951 0.10      
25 A" 941 897 11.30      
26 A" 893 851 7.30      
27 A" 810 771 10.48      
28 A" 667 635 7.45      
29 A" 622 593 23.33      
30 A" 532 506 104.61      
31 A" 418 399 4.05      
32 A" 246 235 0.60      
33 A" 228 217 5.37      

Unscaled Zero Point Vibrational Energy (zpe) 21176.9 cm-1
Scaled (by 0.9526) Zero Point Vibrational Energy (zpe) 20173.1 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at wB97X-D/cc-pVDZ
ABC
0.13858 0.05869 0.04123

See section I.F.4 to change rotational constant units
Geometric Data calculated at wB97X-D/cc-pVDZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.825 -1.245 0.000
C2 -2.114 0.069 0.000
N3 -1.267 1.096 0.000
C4 0.000 0.697 0.000
C5 0.451 -0.631 0.000
C6 -0.543 -1.605 0.000
N7 1.833 -0.684 0.000
C8 2.192 0.571 0.000
N9 1.140 1.456 0.000
H10 -3.170 0.317 0.000
H11 -0.315 -2.667 0.000
H12 3.216 0.917 0.000
H13 1.185 2.463 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34552.40742.66532.35791.33183.70164.40944.01142.06182.07395.48594.7762
C21.34551.33182.20562.65902.29554.01894.33593.53761.08493.27415.39774.0763
N32.40741.33181.32872.43622.79643.57553.49922.43382.05643.88164.48702.8072
C42.66532.20561.32871.40212.36452.29532.19601.36973.19293.37813.22382.1267
C52.35792.65902.43621.40211.39151.38342.11592.19763.74342.17523.16913.1793
C61.33182.29552.79642.36451.39152.54843.49513.49283.25541.08624.52674.4191
N73.70164.01893.57552.29531.38342.54841.30572.24985.10302.92332.11593.2129
C84.40944.33593.49922.19602.11593.49511.30571.37505.36874.09521.08082.1429
N94.01143.53762.43381.36972.19763.49282.24981.37504.45814.37192.14511.0076
H102.06181.08492.05643.19293.74343.25545.10305.36874.45814.13006.41474.8551
H112.07393.27413.88163.37812.17521.08622.92334.09524.37194.13005.03135.3441
H125.48595.39774.48703.22383.16914.52672.11591.08082.14516.41475.03132.5522
H134.77624.07632.80722.12673.17934.41913.21292.14291.00764.85515.34412.5522

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.100 N1 C2 H10 115.648
N1 C6 C5 119.940 N1 C6 H11 117.761
C2 N1 C6 118.046 C2 N3 C4 111.998
N3 C2 H10 116.252 N3 C4 C5 126.269
N3 C4 N9 128.828 C4 C5 C6 115.648
C4 C5 N7 110.978 C4 N9 C8 106.275
C4 N9 H13 126.237 C5 C4 N9 104.903
C5 C6 H11 122.300 C5 N7 C8 103.744
C6 C5 N7 133.374 N7 C8 N9 114.100
N7 C8 H12 124.631 C8 N9 H13 127.488
N9 C8 H12 121.269
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at wB97X-D/cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.250      
2 C 0.074      
3 N -0.305      
4 C 0.132      
5 C 0.196      
6 C -0.141      
7 N -0.361      
8 C 0.237      
9 N -0.434      
10 H 0.159      
11 H 0.177      
12 H 0.178      
13 H 0.337      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.252 3.023 0.000 3.769
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.846 6.450 0.000
y 6.450 -47.791 0.000
z 0.000 0.000 -52.356
Traceless
 xyz
x -0.772 6.450 0.000
y 6.450 3.811 0.000
z 0.000 0.000 -3.038
Polar
3z2-r2-6.077
x2-y2-3.055
xy6.450
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.790 1.278 0.000
y 1.278 12.785 0.000
z 0.000 0.000 6.433


<r2> (average value of r2) Å2
<r2> 253.760
(<r2>)1/2 15.930