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All results from a given calculation for C5H4N4 (purine)

using model chemistry: PBEPBE/6-31G(2df,p)

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at PBEPBE/6-31G(2df,p)
 hartrees
Energy at 0K-411.501042
Energy at 298.15K-411.508723
HF Energy-411.501042
Nuclear repulsion energy410.489053
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at PBEPBE/6-31G(2df,p)
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3573 3536 67.34      
2 A' 3176 3143 0.54      
3 A' 3102 3070 16.09      
4 A' 3089 3057 16.28      
5 A' 1601 1585 54.71      
6 A' 1564 1548 60.13      
7 A' 1472 1457 21.18      
8 A' 1437 1422 2.27      
9 A' 1389 1374 42.12      
10 A' 1368 1354 16.33      
11 A' 1329 1315 58.19      
12 A' 1291 1278 21.47      
13 A' 1273 1260 16.09      
14 A' 1244 1231 27.54      
15 A' 1167 1155 7.14      
16 A' 1103 1092 5.08      
17 A' 1054 1044 10.88      
18 A' 914 905 1.65      
19 A' 881 872 12.06      
20 A' 784 776 13.01      
21 A' 638 631 0.60      
22 A' 551 545 4.12      
23 A' 431 426 11.32      
24 A" 959 950 0.52      
25 A" 910 901 6.77      
26 A" 838 829 3.24      
27 A" 801 793 10.64      
28 A" 648 642 3.88      
29 A" 609 603 23.24      
30 A" 521 516 81.41      
31 A" 400 396 2.13      
32 A" 234 231 0.17      
33 A" 226 224 4.10      

Unscaled Zero Point Vibrational Energy (zpe) 20290.0 cm-1
Scaled (by 0.9897) Zero Point Vibrational Energy (zpe) 20081.1 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at PBEPBE/6-31G(2df,p)
ABC
0.13628 0.05812 0.04074

See section I.F.4 to change rotational constant units
Geometric Data calculated at PBEPBE/6-31G(2df,p)

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.825 -1.262 0.000
C2 -2.110 0.067 0.000
N3 -1.275 1.109 0.000
C4 0.000 0.707 0.000
C5 0.455 -0.632 0.000
C6 -0.542 -1.617 0.000
N7 1.842 -0.696 0.000
C8 2.192 0.573 0.000
N9 1.133 1.475 0.000
H10 -3.176 0.309 0.000
H11 -0.313 -2.688 0.000
H12 3.225 0.912 0.000
H13 1.175 2.488 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35942.43422.68522.36581.33203.71084.41674.03002.07152.07895.49824.8026
C21.35941.33522.20522.65882.30194.02534.33183.53541.09253.28985.40154.0809
N32.43421.33521.33722.45472.82373.60243.50842.43582.06203.91754.50442.8117
C42.68522.20521.33721.41442.38712.31572.19601.36833.20053.40993.23132.1334
C52.36582.65882.45471.41441.40171.38852.11412.21313.75062.19503.17103.2018
C61.33202.30192.82372.38711.40172.55563.50323.51663.26331.09494.53704.4499
N73.71084.02533.60242.31571.38852.55561.31682.28375.11732.93462.12083.2530
C84.41674.33183.50842.19602.11413.50321.31681.39075.37414.11241.08702.1676
N94.03003.53542.43581.36832.21313.51662.28371.39074.46354.40692.16631.0139
H102.07151.09252.06203.20053.75063.26335.11735.37414.46354.14476.42884.8660
H112.07893.28983.91753.40992.19501.09492.93464.11244.40694.14475.04745.3857
H125.49825.40154.50443.23133.17104.53702.12081.08702.16636.42885.04742.5853
H134.80264.08092.81172.13343.20184.44993.25302.16761.01394.86605.38572.5853

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.203 N1 C2 H10 114.877
N1 C6 C5 119.840 N1 C6 H11 117.544
C2 N1 C6 117.574 C2 N3 C4 111.209
N3 C2 H10 115.920 N3 C4 C5 126.257
N3 C4 N9 128.392 C4 C5 C6 115.916
C4 C5 N7 111.414 C4 N9 C8 105.482
C4 N9 H13 126.512 C5 C4 N9 105.351
C5 C6 H11 122.616 C5 N7 C8 102.760
C6 C5 N7 132.670 N7 C8 N9 114.993
N7 C8 H12 123.559 C8 N9 H13 128.005
N9 C8 H12 121.448
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at PBEPBE/6-31G(2df,p) Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.266      
2 C 0.050      
3 N -0.368      
4 C 0.442      
5 C 0.227      
6 C -0.068      
7 N -0.343      
8 C 0.018      
9 N -0.378      
10 H 0.124      
11 H 0.132      
12 H 0.150      
13 H 0.279      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.154 2.917 0.000 3.626
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.621 6.003 0.000
y 6.003 -46.310 0.000
z 0.000 0.000 -50.753
Traceless
 xyz
x -1.089 6.003 0.000
y 6.003 3.877 0.000
z 0.000 0.000 -2.788
Polar
3z2-r2-5.575
x2-y2-3.311
xy6.003
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.723 1.424 0.000
y 1.424 12.022 0.000
z 0.000 0.000 5.024


<r2> (average value of r2) Å2
<r2> 255.501
(<r2>)1/2 15.984