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All results from a given calculation for C5H4N4 (purine)

using model chemistry: PBEPBE/6-31+G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at PBEPBE/6-31+G**
 hartrees
Energy at 0K-411.501325
Energy at 298.15K-411.508943
HF Energy-411.501325
Nuclear repulsion energy409.593959
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at PBEPBE/6-31+G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3570 3529 73.73      
2 A' 3191 3154 0.41      
3 A' 3127 3091 11.60      
4 A' 3111 3075 12.71      
5 A' 1605 1586 57.19      
6 A' 1568 1550 68.26      
7 A' 1475 1459 26.29      
8 A' 1440 1424 1.50      
9 A' 1392 1376 50.81      
10 A' 1374 1359 17.24      
11 A' 1331 1316 54.31      
12 A' 1294 1279 23.94      
13 A' 1276 1262 19.50      
14 A' 1246 1232 24.76      
15 A' 1170 1156 5.22      
16 A' 1103 1090 7.25      
17 A' 1057 1044 14.65      
18 A' 914 903 0.48      
19 A' 882 872 9.82      
20 A' 784 775 10.68      
21 A' 638 631 0.23      
22 A' 551 545 3.09      
23 A' 432 427 12.51      
24 A" 946 935 0.07      
25 A" 895 884 13.53      
26 A" 828 819 10.66      
27 A" 768 759 8.78      
28 A" 641 634 3.20      
29 A" 600 593 26.39      
30 A" 513 507 88.18      
31 A" 394 390 2.05      
32 A" 230 228 0.28      
33 A" 219 217 4.64      

Unscaled Zero Point Vibrational Energy (zpe) 20281.0 cm-1
Scaled (by 0.9886) Zero Point Vibrational Energy (zpe) 20049.8 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at PBEPBE/6-31+G**
ABC
0.13576 0.05784 0.04056

See section I.F.4 to change rotational constant units
Geometric Data calculated at PBEPBE/6-31+G**

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.827 -1.267 0.000
C2 -2.119 0.064 0.000
N3 -1.280 1.107 0.000
C4 0.000 0.710 0.000
C5 0.457 -0.632 0.000
C6 -0.539 -1.623 0.000
N7 1.846 -0.693 0.000
C8 2.197 0.579 0.000
N9 1.134 1.480 0.000
H10 -3.185 0.304 0.000
H11 -0.309 -2.694 0.000
H12 3.231 0.917 0.000
H13 1.175 2.496 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36292.43602.69142.37091.33613.71734.42704.03882.07682.08345.50924.8135
C21.36291.33852.21552.66912.31184.03714.34713.54811.09263.29935.41814.0947
N32.43601.33851.34052.45802.82883.60753.51732.44292.06763.92304.51552.8208
C42.69142.21551.34051.41692.39402.31852.20101.37093.21123.41733.23782.1382
C52.37092.66912.45801.41691.40561.39002.11932.21733.76102.20003.17673.2089
C61.33612.31182.82882.39401.40562.55983.51193.52523.27361.09534.54584.4614
N73.71734.03713.60752.31851.39002.55981.31952.28695.12932.94032.12383.2592
C84.42704.34713.51732.20102.11933.51191.31951.39385.38964.12171.08792.1729
N94.03883.54812.44291.37092.21733.52522.28691.39384.47674.41612.17161.0169
H102.07681.09262.06763.21123.76103.27365.12935.38964.47674.15486.44594.8804
H112.08343.29933.92303.41732.20001.09532.94034.12174.41614.15485.05645.3978
H125.50925.41814.51553.23783.17674.54582.12381.08792.17166.44595.05642.5929
H134.81354.09472.82082.13823.20894.46143.25922.17291.01694.88045.39782.5929

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.775 N1 C2 H10 115.069
N1 C6 C5 119.687 N1 C6 H11 117.591
C2 N1 C6 117.855 C2 N3 C4 111.580
N3 C2 H10 116.156 N3 C4 C5 126.076
N3 C4 N9 128.561 C4 C5 C6 116.028
C4 C5 N7 111.373 C4 N9 C8 105.518
C4 N9 H13 126.497 C5 C4 N9 105.363
C5 C6 H11 122.722 C5 N7 C8 102.892
C6 C5 N7 132.600 N7 C8 N9 114.854
N7 C8 H12 123.535 C8 N9 H13 127.985
N9 C8 H12 121.611
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at PBEPBE/6-31+G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.180      
2 C 0.026      
3 N -0.248      
4 C 0.045      
5 C 0.400      
6 C -0.342      
7 N -0.325      
8 C 0.193      
9 N -0.362      
10 H 0.149      
11 H 0.164      
12 H 0.164      
13 H 0.315      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.270 3.022 0.000 3.779
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -51.453 6.337 0.000
y 6.337 -48.345 0.000
z 0.000 0.000 -52.705
Traceless
 xyz
x -0.929 6.337 0.000
y 6.337 3.734 0.000
z 0.000 0.000 -2.806
Polar
3z2-r2-5.611
x2-y2-3.109
xy6.337
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 17.188 1.388 0.000
y 1.388 13.622 0.000
z 0.000 0.000 6.682


<r2> (average value of r2) Å2
<r2> 257.736
(<r2>)1/2 16.054