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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B3LYP/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B3LYP/6-31G*
 hartrees
Energy at 0K-411.946350
Energy at 298.15K-411.954169
HF Energy-411.946350
Nuclear repulsion energy411.887354
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B3LYP/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3648 3504 77.97      
2 A' 3263 3134 1.60      
3 A' 3202 3075 21.12      
4 A' 3188 3062 17.50      
5 A' 1662 1596 64.84      
6 A' 1624 1559 74.54      
7 A' 1536 1475 28.05      
8 A' 1496 1436 3.86      
9 A' 1439 1382 56.21      
10 A' 1427 1371 16.36      
11 A' 1374 1320 58.66      
12 A' 1325 1273 26.75      
13 A' 1305 1253 6.40      
14 A' 1287 1236 46.42      
15 A' 1211 1163 6.75      
16 A' 1138 1093 5.55      
17 A' 1088 1045 14.68      
18 A' 946 908 1.52      
19 A' 912 876 12.65      
20 A' 809 777 14.23      
21 A' 660 634 0.44      
22 A' 570 547 3.59      
23 A' 445 427 12.09      
24 A" 991 952 0.51      
25 A" 939 902 7.23      
26 A" 874 839 4.87      
27 A" 810 778 8.36      
28 A" 666 639 6.44      
29 A" 623 598 22.80      
30 A" 522 502 110.77      
31 A" 419 403 4.34      
32 A" 248 238 0.34      
33 A" 232 223 3.87      

Unscaled Zero Point Vibrational Energy (zpe) 20938.7 cm-1
Scaled (by 0.9603) Zero Point Vibrational Energy (zpe) 20107.5 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B3LYP/6-31G*
ABC
0.13763 0.05836 0.04098

See section I.F.4 to change rotational constant units
Geometric Data calculated at B3LYP/6-31G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.820 -1.255 0.000
C2 -2.106 0.068 0.000
N3 -1.272 1.103 0.000
C4 0.000 0.705 0.000
C5 0.453 -0.627 0.000
C6 -0.541 -1.610 0.000
N7 1.837 -0.693 0.000
C8 2.187 0.567 0.000
N9 1.132 1.468 0.000
H10 -3.164 0.308 0.000
H11 -0.314 -2.673 0.000
H12 3.215 0.900 0.000
H13 1.176 2.477 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35422.42142.67522.35831.32723.70024.40254.01672.06162.06805.47704.7864
C21.35421.32902.20022.65142.29434.01574.32213.52781.08453.27475.38534.0713
N32.42141.32901.33322.44292.80953.59053.50072.43192.05153.89564.49152.8076
C42.67522.20021.33321.40652.37692.30802.19141.36533.18843.39243.22052.1268
C52.35832.65142.44291.40651.39771.38582.10572.20223.73522.18523.15603.1868
C61.32722.29432.80952.37691.39772.54883.49033.50313.24901.08724.51734.4327
N73.70024.01573.59052.30801.38582.54881.30762.27265.09972.92402.10603.2375
C84.40254.32213.50072.19142.10573.49031.30761.38735.35704.09341.08012.1606
N94.01673.52782.43191.36532.20223.50312.27261.38734.44954.38632.15851.0097
H102.06161.08452.05153.18843.73523.24905.09975.35704.44954.12386.40564.8515
H112.06803.27473.89563.39242.18521.08722.92404.09344.38634.12385.02215.3611
H125.47705.38534.49153.22053.15604.51732.10601.08012.15856.40565.02212.5768
H134.78644.07132.80762.12683.18684.43273.23752.16061.00974.85155.36112.5768

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.961 N1 C2 H10 114.977
N1 C6 C5 119.843 N1 C6 H11 117.517
C2 N1 C6 117.658 C2 N3 C4 111.477
N3 C2 H10 116.062 N3 C4 C5 126.151
N3 C4 N9 128.636 C4 C5 C6 115.910
C4 C5 N7 111.493 C4 N9 C8 105.524
C4 N9 H13 126.493 C5 C4 N9 105.213
C5 C6 H11 122.640 C5 N7 C8 102.816
C6 C5 N7 132.598 N7 C8 N9 114.954
N7 C8 H12 123.498 C8 N9 H13 127.983
N9 C8 H12 121.548
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B3LYP/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.407      
2 C 0.160      
3 N -0.472      
4 C 0.518      
5 C 0.227      
6 C 0.029      
7 N -0.489      
8 C 0.234      
9 N -0.643      
10 H 0.155      
11 H 0.164      
12 H 0.175      
13 H 0.347      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.201 2.953 0.000 3.683
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.958 6.107 0.000
y 6.107 -46.745 0.000
z 0.000 0.000 -51.089
Traceless
 xyz
x -1.041 6.107 0.000
y 6.107 3.778 0.000
z 0.000 0.000 -2.738
Polar
3z2-r2-5.475
x2-y2-3.213
xy6.107
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.707 1.365 0.000
y 1.365 11.384 0.000
z 0.000 0.000 4.181


<r2> (average value of r2) Å2
<r2> 254.396
(<r2>)1/2 15.950