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All results from a given calculation for C5H12S (1-Pentanethiol)

using model chemistry: B97D3/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A'
Energy calculated at B97D3/6-31G*
 hartrees
Energy at 0K-595.824957
Energy at 298.15K-595.837626
HF Energy-595.824957
Nuclear repulsion energy 
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B97D3/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3062 3002 47.78      
2 A' 3006 2947 54.43      
3 A' 2986 2927 58.65      
4 A' 2985 2926 18.42      
5 A' 2973 2914 27.15      
6 A' 2961 2903 7.85      
7 A' 2630 2578 37.02      
8 A' 1514 1484 3.40      
9 A' 1504 1475 0.08      
10 A' 1492 1462 1.00      
11 A' 1488 1459 2.14      
12 A' 1484 1455 0.45      
13 A' 1416 1388 1.33      
14 A' 1395 1367 0.01      
15 A' 1368 1341 13.34      
16 A' 1303 1277 9.23      
17 A' 1239 1215 29.14      
18 A' 1125 1103 3.35      
19 A' 1055 1034 0.28      
20 A' 1047 1026 1.24      
21 A' 1014 995 0.36      
22 A' 899 881 0.64      
23 A' 849 833 1.46      
24 A' 717 703 5.28      
25 A' 434 425 1.69      
26 A' 344 337 0.35      
27 A' 244 239 1.38      
28 A' 114 112 1.14      
29 A" 3062 3002 68.21      
30 A" 3057 2997 49.79      
31 A" 3028 2969 31.10      
32 A" 3011 2952 11.76      
33 A" 2989 2931 1.28      
34 A" 1505 1475 5.91      
35 A" 1328 1302 0.10      
36 A" 1325 1299 0.80      
37 A" 1279 1254 0.24      
38 A" 1213 1190 0.14      
39 A" 1077 1055 2.06      
40 A" 961 943 0.09      
41 A" 839 823 1.86      
42 A" 756 742 0.14      
43 A" 731 716 4.51      
44 A" 251 246 0.01      
45 A" 175 171 16.10      
46 A" 143 140 2.32      
47 A" 87 85 3.00      
48 A" 58 56 2.53      

Unscaled Zero Point Vibrational Energy (zpe) 34758.7 cm-1
Scaled (by 0.9804) Zero Point Vibrational Energy (zpe) 34077.5 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B97D3/6-31G*
ABC
0.47264 0.02636 0.02556

See section I.F.4 to change rotational constant units
Geometric Data calculated at B97D3/6-31G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
S1 -2.447 1.658 0.000
H2 -3.684 1.106 0.000
C3 -1.503 0.066 0.000
H4 -1.777 -0.516 0.892
H5 -1.777 -0.516 -0.892
C6 0.000 0.361 0.000
H7 0.253 0.968 -0.884
H8 0.253 0.968 0.884
C9 0.841 -0.925 0.000
H10 0.580 -1.535 0.883
H11 0.580 -1.535 -0.883
C12 2.353 -0.654 0.000
H13 2.611 -0.044 0.882
H14 2.611 -0.044 -0.882
C15 3.190 -1.940 0.000
H16 2.973 -2.553 0.888
H17 2.973 -2.553 -0.888
H18 4.267 -1.718 0.000

Atom - Atom Distances (Å)
  S1 H2 C3 H4 H5 C6 H7 H8 C9 H10 H11 C12 H13 H14 C15 H16 H17 H18
S11.35411.85072.44302.44302.76942.92362.92364.18114.48724.48725.32785.40915.40916.68716.92036.92037.5151
H21.35412.41592.65722.65723.75834.03724.03724.95985.09275.09276.28826.45966.45967.51847.64757.64758.4377
C31.85072.41591.09931.09931.53192.16362.16362.54512.77172.77173.92314.20954.20955.10395.26125.26126.0400
H42.44302.65721.09931.78322.17303.07872.51512.79612.56833.12174.22784.41394.75695.24375.16825.46616.2271
H52.44302.65721.09931.78322.17302.51513.07872.79613.12172.56834.22784.75694.41395.24375.46615.16826.2271
C62.76943.75831.53192.17302.17301.10221.10221.53642.16982.16982.56272.78582.78583.93304.25624.25624.7467
H72.92364.03722.16363.07872.51511.10221.76792.17073.08112.52422.79703.11502.56614.22654.78914.44914.9103
H82.92364.03722.16362.51513.07871.10221.76792.17072.52423.08112.79702.56613.11504.22654.44914.78914.9103
C94.18114.95982.54512.79612.79611.53642.17072.17071.10401.10401.53622.16522.16522.55882.82532.82533.5168
H104.48725.09272.77172.56833.12172.16983.08112.52421.10401.76562.16742.51933.07592.78452.59993.14593.7955
H114.48725.09272.77173.12172.56832.16982.52423.08111.10401.76562.16743.07592.51932.78453.14592.59993.7955
C125.32786.28823.92314.22784.22782.56272.79702.79701.53622.16742.16741.10311.10311.53422.18612.18612.1900
H135.40916.45964.20954.41394.75692.78583.11502.56612.16522.51933.07591.10311.76382.16982.53513.09202.5146
H145.40916.45964.20954.75694.41392.78582.56613.11502.16523.07592.51931.10311.76382.16983.09202.53512.5146
C156.68717.51845.10395.24375.24373.93304.22654.22652.55882.78452.78451.53422.16982.16981.10111.10111.0999
H166.92037.64755.26125.16825.46614.25624.78914.44912.82532.59993.14592.18612.53513.09201.10111.77671.7784
H176.92037.64755.26125.46615.16824.25624.44914.78912.82533.14592.59992.18613.09202.53511.10111.77671.7784
H187.51518.43776.04006.22716.22714.74674.91034.91033.51683.79553.79552.19002.51462.51461.09991.77841.7784

picture of 1-Pentanethiol state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
S1 C3 H4 109.287 S1 C3 H5 109.287
S1 C3 C6 109.861 H2 S1 C3 97.257
C3 C6 H7 109.327 C3 C6 H8 109.327
C3 C6 C9 112.412 H4 C3 H5 108.223
H4 C3 C6 110.076 H5 C3 C6 110.076
C6 C9 H10 109.394 C6 C9 H11 109.394
C6 C9 C12 113.262 H7 C6 H8 106.550
H7 C6 C9 109.526 H8 C6 C9 109.526
C9 C12 H13 109.110 C9 C12 H14 109.110
C9 C12 C15 113.085 H10 C9 H11 106.124
H10 C9 C12 109.209 H11 C9 C12 109.209
C12 C15 H16 111.043 C12 C15 H17 111.043
C12 C15 H18 111.559 H13 C12 H14 106.083
H13 C12 C15 109.606 H14 C12 C15 109.606
H16 C15 H17 107.546 H16 C15 H18 107.735
H17 C15 H18 107.735
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B97D3/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 S -0.094      
2 H 0.093      
3 C -0.408      
4 H 0.175      
5 H 0.175      
6 C -0.275      
7 H 0.156      
8 H 0.156      
9 C -0.259      
10 H 0.136      
11 H 0.136      
12 C -0.259      
13 H 0.139      
14 H 0.139      
15 C -0.455      
16 H 0.147      
17 H 0.147      
18 H 0.149      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  0.380 -1.809 0.000 1.848
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -44.644 3.816 0.000
y 3.816 -51.349 0.000
z 0.000 0.000 -48.029
Traceless
 xyz
x 5.045 3.816 0.000
y 3.816 -5.012 0.000
z 0.000 0.000 -0.032
Polar
3z2-r2-0.065
x2-y26.705
xy3.816
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 12.894 -1.956 0.000
y -1.956 10.607 0.000
z 0.000 0.000 8.586


<r2> (average value of r2) Å2
<r2> 415.312
(<r2>)1/2 20.379