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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B97D3/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B97D3/6-31G*
 hartrees
Energy at 0K-411.679819
Energy at 298.15K-411.687439
HF Energy-411.679819
Nuclear repulsion energy 
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B97D3/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3578 3508 56.47      
2 A' 3205 3143 3.07      
3 A' 3138 3077 26.90      
4 A' 3122 3061 24.46      
5 A' 1613 1581 59.02      
6 A' 1576 1545 61.33      
7 A' 1481 1452 23.74      
8 A' 1453 1425 2.30      
9 A' 1401 1374 37.18      
10 A' 1387 1360 15.26      
11 A' 1340 1314 47.81      
12 A' 1292 1267 42.83      
13 A' 1275 1250 18.17      
14 A' 1255 1230 35.04      
15 A' 1177 1154 6.68      
16 A' 1109 1087 4.56      
17 A' 1056 1036 15.57      
18 A' 927 909 1.40      
19 A' 891 874 12.52      
20 A' 794 778 11.84      
21 A' 649 637 0.47      
22 A' 561 550 3.43      
23 A' 433 425 11.68      
24 A" 950 931 0.46      
25 A" 900 882 8.95      
26 A" 825 808 5.46      
27 A" 779 764 9.78      
28 A" 648 635 4.32      
29 A" 606 594 24.01      
30 A" 501 491 102.92      
31 A" 397 390 3.28      
32 A" 234 230 0.26      
33 A" 220 215 4.01      

Unscaled Zero Point Vibrational Energy (zpe) 20386.8 cm-1
Scaled (by 0.9804) Zero Point Vibrational Energy (zpe) 19987.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B97D3/6-31G*
ABC
0.13606 0.05780 0.04057

See section I.F.4 to change rotational constant units
Geometric Data calculated at B97D3/6-31G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.851 -1.247 0.000
C2 -2.130 0.076 0.000
N3 -1.270 1.116 0.000
C4 0.000 0.705 0.000
C5 0.453 -0.644 0.000
C6 -0.556 -1.615 0.000
N7 1.846 -0.699 0.000
C8 2.217 0.566 0.000
N9 1.156 1.463 0.000
H10 -3.190 0.338 0.000
H11 -0.333 -2.685 0.000
H12 3.246 0.915 0.000
H13 1.202 2.475 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35202.43282.68972.38121.34583.73684.45354.04782.07492.09075.53644.8138
C21.35201.34932.22092.68162.30994.05054.37483.56691.09193.29415.44124.1059
N32.43281.34931.33442.46282.82203.60543.53012.45072.07173.91404.52042.8210
C42.68972.22091.33441.42342.38552.31912.22171.38253.21103.40603.25302.1397
C52.38122.68162.46281.42341.40011.39372.13942.22153.77312.18653.19893.2082
C61.34582.30992.82202.38551.40012.57053.52803.52203.27871.09304.56704.4519
N73.73684.05053.60542.31911.39372.57051.31832.26925.14142.94772.13703.2389
C84.45354.37483.53012.22172.13943.52801.31831.38945.41214.13151.08652.1626
N94.04783.56692.45071.38252.22153.52202.26921.38944.48954.40682.16051.0134
H102.07491.09192.07173.21103.77313.27875.14145.41214.48954.15926.46204.8844
H112.09073.29413.91403.40602.18651.09302.94774.13154.40684.15925.07625.3834
H125.53645.44124.52043.25303.19894.56702.13701.08652.16056.46205.07622.5716
H134.81384.10592.82102.13973.20824.45193.23892.16261.01344.88445.38342.5716

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.522 N1 C2 H10 115.514
N1 C6 C5 120.209 N1 C6 H11 117.773
C2 N1 C6 117.721 C2 N3 C4 111.764
N3 C2 H10 115.963 N3 C4 C5 126.334
N3 C4 N9 128.953 C4 C5 C6 115.449
C4 C5 N7 110.908 C4 N9 C8 106.610
C4 N9 H13 125.855 C5 C4 N9 104.713
C5 C6 H11 122.018 C5 N7 C8 104.017
C6 C5 N7 133.643 N7 C8 N9 113.753
N7 C8 H12 124.979 C8 N9 H13 127.535
N9 C8 H12 121.268
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B97D3/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.395      
2 C 0.145      
3 N -0.466      
4 C 0.514      
5 C 0.220      
6 C 0.021      
7 N -0.481      
8 C 0.221      
9 N -0.629      
10 H 0.159      
11 H 0.166      
12 H 0.179      
13 H 0.344      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.205 2.941 0.000 3.675
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.609 6.082 0.000
y 6.082 -46.521 0.000
z 0.000 0.000 -51.011
Traceless
 xyz
x -0.843 6.082 0.000
y 6.082 3.789 0.000
z 0.000 0.000 -2.946
Polar
3z2-r2-5.892
x2-y2-3.088
xy6.082
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.306 1.411 0.000
y 1.411 11.698 0.000
z 0.000 0.000 4.250


<r2> (average value of r2) Å2
<r2> 256.530
(<r2>)1/2 16.017