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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: B97D3/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at B97D3/6-31G*
 hartrees
Energy at 0K-398.713044
Energy at 298.15K 
HF Energy-398.713044
Nuclear repulsion energy 
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B97D3/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3600 3530 51.69      
2 A 3588 3518 54.97      
3 A 3493 3425 0.37      
4 A 3396 3329 0.64      
5 A 3073 3013 29.61      
6 A 3000 2941 17.74      
7 A 2910 2853 76.82      
8 A 1754 1720 222.83      
9 A 1676 1643 27.90      
10 A 1502 1473 1.56      
11 A 1438 1410 67.92      
12 A 1381 1354 2.45      
13 A 1377 1350 9.02      
14 A 1345 1319 35.12      
15 A 1306 1280 11.14      
16 A 1228 1204 8.63      
17 A 1179 1156 5.14      
18 A 1148 1125 160.88      
19 A 1116 1094 101.18      
20 A 1069 1048 109.47      
21 A 1011 991 30.36      
22 A 976 957 3.91      
23 A 889 872 181.85      
24 A 793 778 20.06      
25 A 718 704 33.39      
26 A 640 627 82.12      
27 A 585 573 192.06      
28 A 556 546 8.00      
29 A 511 501 31.63      
30 A 423 414 8.46      
31 A 300 294 5.80      
32 A 294 288 10.65      
33 A 256 251 31.66      
34 A 224 220 6.04      
35 A 163 160 2.16      
36 A 23i 22i 0.53      

Unscaled Zero Point Vibrational Energy (zpe) 24446.4 cm-1
Scaled (by 0.9804) Zero Point Vibrational Energy (zpe) 23967.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B97D3/6-31G*
ABC
0.11827 0.07784 0.05018

See section I.F.4 to change rotational constant units
Geometric Data calculated at B97D3/6-31G*

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.779 -0.563 -0.020
O2 2.107 -0.312 -0.198
O3 0.375 -1.659 0.350
C4 -0.089 0.669 -0.323
C5 -1.511 0.472 0.246
O6 -2.175 -0.652 -0.300
N7 0.464 1.944 0.144
H8 2.565 -1.155 0.006
H9 -0.178 0.719 -1.421
H10 -1.448 0.422 1.352
H11 -2.099 1.361 -0.014
H12 -1.631 -1.419 -0.032
H13 1.380 2.096 -0.282
H14 0.635 1.885 1.152

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.36331.22461.53712.52752.96892.53191.88222.12692.79423.46212.55702.73902.7179
O21.36332.26082.40843.72914.29712.81180.98062.78953.94654.53073.90152.51742.9693
O31.22462.26082.46692.84812.81803.60952.27343.01602.94193.92112.05583.93803.6429
C41.53712.40842.46691.54482.46981.46653.23721.10252.17122.14862.61182.04842.0444
C52.52753.72912.84811.54481.41572.46574.39622.14911.10931.09681.91563.35792.7248
O62.96894.29712.81802.46981.41573.72924.77712.67002.10082.03530.97814.49394.0555
N72.53192.81183.60951.46652.46573.72923.74662.08862.72612.63383.96611.02151.0233
H81.88220.98062.27343.23724.39624.77713.74663.61574.51685.30004.20443.47273.7793
H92.12692.78953.01601.10252.14912.67002.08863.61573.06462.46662.93482.37022.9392
H102.79423.94652.94192.17121.10932.10082.72614.51683.06461.78162.31043.67022.5535
H113.46214.53073.92112.14861.09682.03532.63385.30002.46661.78162.81963.56593.0183
H122.55703.90152.05582.61181.91560.97813.96614.20442.93482.31042.81964.63494.1778
H132.73902.51743.93802.04843.35794.49391.02153.47272.37023.67023.56594.63491.6297
H142.71792.96933.64292.04442.72484.05551.02333.77932.93922.55353.01834.17781.6297

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 106.992 C1 C4 C5 110.197
C1 C4 N7 113.717 C1 C4 H9 106.822
O2 C1 O3 122.834 O2 C1 C4 111.289
O3 C1 C4 125.806 C4 C5 O6 112.782
C4 C5 H10 108.677 C4 C5 H11 107.795
C4 N7 H13 110.878 C4 N7 H14 110.360
C5 C4 N7 110.201 C5 C4 H9 107.728
C5 O6 H12 105.667 O6 C5 H10 112.050
O6 C5 H11 107.659 N7 C4 H9 107.925
H10 C5 H11 107.663 H13 N7 H14 107.415
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B97D3/6-31G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.557      
2 O -0.549      
3 O -0.464      
4 C -0.110      
5 C -0.038      
6 O -0.613      
7 N -0.692      
8 H 0.407      
9 H 0.190      
10 H 0.119      
11 H 0.169      
12 H 0.407      
13 H 0.317      
14 H 0.300      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.439 0.254 0.680 3.515
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.011 -2.148 -0.893
y -2.148 -43.915 1.257
z -0.893 1.257 -39.201
Traceless
 xyz
x 0.546 -2.148 -0.893
y -2.148 -3.809 1.257
z -0.893 1.257 3.262
Polar
3z2-r26.524
x2-y22.903
xy-2.148
xz-0.893
yz1.257


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.147 0.151 -0.091
y 0.151 7.839 -0.111
z -0.091 -0.111 5.633


<r2> (average value of r2) Å2
<r2> 218.151
(<r2>)1/2 14.770