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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B97D3/3-21G

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B97D3/3-21G
 hartrees
Energy at 0K-409.387042
Energy at 298.15K-409.394877
HF Energy-409.387042
Nuclear repulsion energy 
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B97D3/3-21G
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3528 3468 71.23      
2 A' 3236 3181 1.51      
3 A' 3171 3117 20.91      
4 A' 3151 3097 16.48      
5 A' 1561 1534 48.20      
6 A' 1516 1490 28.54      
7 A' 1420 1396 21.19      
8 A' 1412 1388 17.06      
9 A' 1378 1355 7.97      
10 A' 1347 1324 20.74      
11 A' 1312 1290 11.78      
12 A' 1239 1218 26.90      
13 A' 1215 1195 64.67      
14 A' 1176 1156 36.67      
15 A' 1140 1121 10.84      
16 A' 1064 1046 3.74      
17 A' 1026 1008 18.98      
18 A' 918 902 0.60      
19 A' 869 854 11.25      
20 A' 771 758 8.96      
21 A' 655 644 0.61      
22 A' 564 555 3.14      
23 A' 428 420 13.12      
24 A" 993 976 3.28      
25 A" 938 922 15.77      
26 A" 870 855 2.91      
27 A" 842 827 25.46      
28 A" 658 646 28.06      
29 A" 636 626 118.86      
30 A" 619 608 25.48      
31 A" 432 425 2.34      
32 A" 251 246 0.83      
33 A" 235 231 5.74      

Unscaled Zero Point Vibrational Energy (zpe) 20283.8 cm-1
Scaled (by 0.983) Zero Point Vibrational Energy (zpe) 19939.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B97D3/3-21G
ABC
0.13457 0.05674 0.03991

See section I.F.4 to change rotational constant units
Geometric Data calculated at B97D3/3-21G

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.859 -1.269 0.000
C2 -2.160 0.064 0.000
N3 -1.281 1.108 0.000
C4 0.000 0.710 0.000
C5 0.451 -0.647 0.000
C6 -0.546 -1.625 0.000
N7 1.864 -0.694 0.000
C8 2.241 0.587 0.000
N9 1.155 1.482 0.000
H10 -3.214 0.324 0.000
H11 -0.301 -2.685 0.000
H12 3.263 0.938 0.000
H13 1.183 2.498 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36672.44622.71562.39251.36033.76794.50114.08132.09142.10515.57794.8423
C21.36671.36432.25462.70572.33574.09524.43233.60591.08603.31825.49334.1353
N32.44621.36431.34162.46532.82943.62533.56092.46532.08603.91694.54782.8295
C42.71562.25461.34161.42952.39772.33412.24461.38943.23763.40793.27122.1439
C52.39252.70572.46531.42951.39661.41442.17432.24203.79152.17223.22823.2286
C61.36032.33572.82942.39771.39662.58393.55823.54203.30391.08804.59134.4705
N73.76794.09523.62532.33411.41442.58391.33552.28875.17992.94122.14973.2640
C84.50114.43233.56092.24462.17433.55821.33551.40715.46214.14321.08062.1844
N94.08133.60592.46531.38942.24203.54202.28871.40714.52074.41362.17691.0164
H102.09141.08602.08603.23763.79153.30395.17995.46214.52074.18796.50684.9057
H112.10513.31823.91693.40792.17221.08802.94124.14324.41364.18795.08215.3908
H125.57795.49334.54783.27123.22824.59132.14971.08062.17696.50685.08212.6001
H134.84234.13532.82952.14393.22864.47053.26402.18441.01644.90575.39082.6001

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 126.545 N1 C2 H10 116.563
N1 C6 C5 120.328 N1 C6 H11 118.481
C2 N1 C6 118.389 C2 N3 C4 113.476
N3 C2 H10 116.892 N3 C4 C5 125.357
N3 C4 N9 129.411 C4 C5 C6 115.904
C4 C5 N7 110.017 C4 N9 C8 107.205
C4 N9 H13 125.348 C5 C4 N9 105.232
C5 C6 H11 121.191 C5 N7 C8 105.241
C6 C5 N7 134.078 N7 C8 N9 112.306
N7 C8 H12 125.608 C8 N9 H13 127.447
N9 C8 H12 122.086
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B97D3/3-21G Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.511      
2 C 0.176      
3 N -0.568      
4 C 0.627      
5 C 0.133      
6 C 0.088      
7 N -0.540      
8 C 0.273      
9 N -0.746      
10 H 0.238      
11 H 0.240      
12 H 0.246      
13 H 0.345      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.145 3.064 0.000 3.740
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.686 6.185 0.000
y 6.185 -46.979 0.000
z 0.000 0.000 -52.298
Traceless
 xyz
x -0.048 6.185 0.000
y 6.185 4.013 0.000
z 0.000 0.000 -3.965
Polar
3z2-r2-7.930
x2-y2-2.707
xy6.185
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.475 1.437 0.000
y 1.437 10.815 0.000
z 0.000 0.000 3.224


<r2> (average value of r2) Å2
<r2> 260.499
(<r2>)1/2 16.140