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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B97D3/6-311G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B97D3/6-311G**
 hartrees
Energy at 0K-411.779337
Energy at 298.15K-411.787039
HF Energy-411.779337
Nuclear repulsion energy410.392217
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B97D3/6-311G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3590 3539 62.27      
2 A' 3185 3140 1.57      
3 A' 3118 3073 20.80      
4 A' 3104 3060 22.67      
5 A' 1601 1578 58.26      
6 A' 1565 1543 64.34      
7 A' 1465 1444 21.09      
8 A' 1439 1418 1.72      
9 A' 1388 1368 33.35      
10 A' 1373 1353 23.04      
11 A' 1328 1309 48.56      
12 A' 1278 1260 42.78      
13 A' 1257 1239 10.38      
14 A' 1243 1225 40.41      
15 A' 1170 1154 6.81      
16 A' 1102 1086 5.42      
17 A' 1043 1028 18.63      
18 A' 928 915 1.33      
19 A' 891 878 12.72      
20 A' 792 781 11.33      
21 A' 651 642 0.42      
22 A' 561 553 3.21      
23 A' 434 428 11.93      
24 A" 954 940 0.39      
25 A" 905 892 11.50      
26 A" 833 821 5.92      
27 A" 789 778 11.71      
28 A" 649 639 4.66      
29 A" 607 598 25.22      
30 A" 520 513 87.10      
31 A" 399 393 2.69      
32 A" 234 231 0.60      
33 A" 220 217 4.55      

Unscaled Zero Point Vibrational Energy (zpe) 20307.2 cm-1
Scaled (by 0.9857) Zero Point Vibrational Energy (zpe) 20016.8 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B97D3/6-311G**
ABC
0.13663 0.05794 0.04069

See section I.F.4 to change rotational constant units
Geometric Data calculated at B97D3/6-311G**

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.847 -1.245 0.000
C2 -2.128 0.075 0.000
N3 -1.267 1.111 0.000
C4 0.000 0.704 0.000
C5 0.451 -0.643 0.000
C6 -0.555 -1.613 0.000
N7 1.842 -0.696 0.000
C8 2.216 0.565 0.000
N9 1.155 1.462 0.000
H10 -3.186 0.336 0.000
H11 -0.330 -2.680 0.000
H12 3.243 0.912 0.000
H13 1.198 2.471 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34972.42612.68542.37571.34313.72994.44804.04182.07202.08835.52834.8043
C21.34971.34692.21952.67782.30744.04484.37193.56391.08953.29015.43644.0994
N32.42611.34691.33102.45562.81533.59633.52572.44732.06933.90494.51492.8155
C42.68542.21951.33101.42102.38282.31392.22021.38093.20743.40013.24972.1347
C52.37572.67782.45561.42101.39771.39202.13892.21943.76692.18123.19583.2027
C61.34312.30742.81532.38281.39772.56703.52493.51823.27421.09044.56114.4446
N73.72994.04483.59632.31391.39202.56701.31542.26455.13322.94172.13253.2321
C84.44804.37193.52572.22022.13893.52491.31541.38925.40694.12441.08412.1610
N94.04183.56392.44731.38092.21943.51822.26451.38924.48434.39952.15971.0105
H102.07201.08952.06933.20743.76693.27425.13325.40694.48434.15396.45504.8762
H112.08833.29013.90493.40012.18121.09042.94174.12444.39954.15395.06615.3728
H125.52835.43644.51493.24973.19584.56112.13251.08412.15976.45505.06612.5721
H134.80434.09942.81552.13473.20274.44463.23212.16101.01054.87625.37282.5721

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.353 N1 C2 H10 115.579
N1 C6 C5 120.151 N1 C6 H11 117.887
C2 N1 C6 117.808 C2 N3 C4 111.919
N3 C2 H10 116.068 N3 C4 C5 126.229
N3 C4 N9 129.004 C4 C5 C6 115.540
C4 C5 N7 110.794 C4 N9 C8 106.660
C4 N9 H13 125.786 C5 C4 N9 104.767
C5 C6 H11 121.962 C5 N7 C8 104.215
C6 C5 N7 133.665 N7 C8 N9 113.563
N7 C8 H12 125.021 C8 N9 H13 127.554
N9 C8 H12 121.416
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B97D3/6-311G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.298      
2 C 0.110      
3 N -0.309      
4 C 0.365      
5 C -0.072      
6 C 0.131      
7 N -0.315      
8 C 0.178      
9 N -0.378      
10 H 0.116      
11 H 0.119      
12 H 0.119      
13 H 0.236      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.202 2.941 0.000 3.674
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.073 6.078 0.000
y 6.078 -47.212 0.000
z 0.000 0.000 -51.519
Traceless
 xyz
x -0.707 6.078 0.000
y 6.078 3.583 0.000
z 0.000 0.000 -2.876
Polar
3z2-r2-5.752
x2-y2-2.860
xy6.078
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.823 1.474 0.000
y 1.474 12.176 0.000
z 0.000 0.000 5.165


<r2> (average value of r2) Å2
<r2> 256.207
(<r2>)1/2 16.006