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Geometry for HO2CCHNH2CH2OH (Serine) 1A C1

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InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m0/s1 INChIKey=MTCFGRXMJLQNBG-UWTATZPHSA-N

CCD/6-31G*


Point group is C1
Atom Internal Principal
x (Å) y (Å) z (Å)   a (Å) b (Å) c (Å)
C1 0.7810 -0.5431 0.0048   0.7813 -0.5426 -0.0089
O2 2.0614 -0.3370 -0.3660   2.0586 -0.3308 -0.3869
O3 0.4076 -1.5620 0.5487   0.4127 -1.5691 0.5240
C4 -0.0905 0.6713 -0.3091   -0.0933 0.6754 -0.2991
C5 -1.5156 0.4440 0.1953   -1.5142 0.4404 0.2134
O6 -2.1157 -0.6930 -0.3884   -2.1184 -0.6889 -0.3811
N7 0.4374 1.9222 0.2273   0.4382 1.9192 0.2502
H8 2.5631 -1.1388 -0.1321   2.5625 -1.1354 -0.1680
H9 -0.1300 0.7587 -1.4034   -0.1415 0.7778 -1.3918
H10 -1.5045 0.3858 1.2966   -1.4943 0.3670 1.3137
H11 -2.1120 1.3167 -0.0867   -2.1132 1.3165 -0.0519
H12 -1.6640 -1.4671 -0.0186   -1.6634 -1.4677 -0.0256
H13 1.3426 2.1381 -0.1832   1.3400 2.1412 -0.1645
H14 0.5671 1.8538 1.2354   0.5760 1.8370 1.2562
Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C1 1.3488 1.2138 1.5273 2.5070 2.9271 2.4991 1.8840 2.1231 2.7848 3.4404 2.6139 2.7458 2.7028
O2 1.3488 2.2521 2.3771 3.7041 4.1923 2.8450 0.9743 2.6607 4.0003 4.4978 3.9085 2.5839 3.0979
O3 1.2138 2.2521 2.4436 2.8013 2.8285 3.4991 2.2997 3.0798 2.8300 3.8780 2.1500 3.8859 3.4877
C4 1.5273 2.3771 2.4436 1.5287 2.4432 1.4599 3.2170 1.0985 2.1585 2.1336 2.6708 2.0545 2.0534
C5 2.5070 3.7041 2.8013 1.5287 1.4120 2.4495 4.3873 2.1389 1.1029 1.0940 1.9288 3.3440 2.7216
O6 2.9271 4.1923 2.8285 2.4432 1.4120 3.7063 4.7070 2.6610 2.0920 2.0322 0.9696 4.4740 4.0399
N7 2.4991 2.8450 3.4991 1.4599 2.4495 3.7063 3.7440 2.0821 2.6972 2.6390 3.9955 1.0171 1.0187
H8 1.8840 0.9743 2.2997 3.2170 4.3873 4.7070 3.7440 3.5312 4.5728 5.2809 4.2413 3.4972 3.8483
H9 2.1231 2.6607 3.0798 1.0985 2.1389 2.6610 2.0821 3.5312 3.0526 2.4440 3.0373 2.3579 2.9408
H10 2.7848 4.0003 2.8300 2.1585 1.1029 2.0920 2.6972 4.5728 3.0526 1.7746 2.2778 3.6560 2.5398
H11 3.4404 4.4978 3.8780 2.1336 1.0940 2.0322 2.6390 5.2809 2.4440 1.7746 2.8204 3.5522 3.0355
H12 2.6139 3.9085 2.1500 2.6708 1.9288 0.9696 3.9955 4.2413 3.0373 2.2778 2.8204 4.6973 4.1927
H13 2.7458 2.5839 3.8859 2.0545 3.3440 4.4740 1.0171 3.4972 2.3579 3.6560 3.5522 4.6973 1.6415
H14 2.7028 3.0979 3.4877 2.0534 2.7216 4.0399 1.0187 3.8483 2.9408 2.5398 3.0355 4.1927 1.6415
Maximum atom distance is 5.2809Å between atoms H8 and H11.
picture of Serine
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
C1 C4 C5 110.239 C1 C4 N7 113.543
O2 C1 O3 122.915 O2 C1 C4 111.330
O3 C1 C4 125.728 C4 C5 O6 112.304
C5 C4 N7 110.072
Calculated Bond Angles (degrees) (Involving Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
C1 O2 H8 107.284 C1 C4 H9 106.771
C4 C5 H10 109.145 C4 C5 H11 107.732
C4 N7 H13 110.814 C4 N7 H14 110.616
C5 C4 H9 107.882 C5 O6 H12 106.694
O6 C5 H10 111.996 O6 C5 H11 107.702
N7 C4 H9 108.109 H10 C5 H11 107.762
H13 N7 H14 107.477

For information on specific bond angles or dihedrals see the geometry comparison page in section Comparisons > Geometry > Bonds, angles.