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Computational Chemistry Comparison and Benchmark DataBase
Release 22 (May 2022) Standard Reference Database 101
National Institute of Standards and Technology
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You are here: Home > Geometry > Calculated > Calculated geometry OR Calculated > Geometry > Calculated geometry
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Geometry for C5H4N4 (purine)
1A CS
1910171554
InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) INChIKey=KDCGOANMDULRCW-UHFFFAOYSA-N
B3PW91/6-31G*
Point group is Cs
| Atom |
Internal |
|
Principal |
| x (Å) |
y (Å) |
z (Å) |
|
a (Å) |
b (Å) |
c (Å) |
| N1 |
-1.8153 |
-1.2529 |
0.0000 |
|
2.0974 |
0.6826 |
0.0000 |
| C2 |
-2.0998 |
0.0678 |
0.0000 |
|
1.9931 |
-0.6644 |
0.0000 |
| N3 |
-1.2690 |
1.1015 |
0.0000 |
|
0.9018 |
-1.4179 |
0.0000 |
| C4 |
0.0000 |
0.7035 |
0.0000 |
|
-0.2008 |
-0.6742 |
0.0000 |
| C5 |
0.4525 |
-0.6257 |
0.0000 |
|
-0.2551 |
0.7288 |
0.0000 |
| C6 |
-0.5393 |
-1.6075 |
0.0000 |
|
0.9758 |
1.3866 |
0.0000 |
| N7 |
1.8325 |
-0.6907 |
0.0000 |
|
-1.5591 |
1.1850 |
0.0000 |
| C8 |
2.1800 |
0.5673 |
0.0000 |
|
-2.2513 |
0.0786 |
0.0000 |
| N9 |
1.1279 |
1.4645 |
0.0000 |
|
-1.4990 |
-1.0816 |
0.0000 |
| H10 |
-3.1578 |
0.3079 |
0.0000 |
|
2.9386 |
-1.1965 |
0.0000 |
| H11 |
-0.3139 |
-2.6713 |
0.0000 |
|
1.0633 |
2.4706 |
0.0000 |
| H12 |
3.2078 |
0.9009 |
0.0000 |
|
-3.3315 |
0.0523 |
0.0000 |
| H13 |
1.1717 |
2.4726 |
0.0000 |
|
-1.8287 |
-2.0353 |
0.0000 |
Atom - Atom Distances (Å)
| |
N1 |
C2 |
N3 |
C4 |
C5 |
C6 |
N7 |
C8 |
N9 |
H10 |
H11 |
H12 |
H13 |
| N1 |
|
1.3510 |
2.4169 |
2.6688 |
2.3530 |
1.3243 |
3.6909 |
4.3904 |
4.0058 |
2.0587 |
2.0655 |
5.4654 |
4.7751 |
| C2 |
1.3510 |
|
1.3262 |
2.1939 |
2.6449 |
2.2895 |
4.0048 |
4.3089 |
3.5169 |
1.0849 |
3.2699 |
5.3726 |
4.0603 |
| N3 |
2.4169 |
1.3262 |
|
1.3300 |
2.4386 |
2.8055 |
3.5821 |
3.4902 |
2.4242 |
2.0488 |
3.8918 |
4.4813 |
2.7994 |
| C4 |
2.6688 |
2.1939 |
1.3300 |
|
1.4040 |
2.3730 |
2.3025 |
2.1843 |
1.3606 |
3.1825 |
3.3893 |
3.2138 |
2.1220 |
| C5 |
2.3530 |
2.6449 |
2.4386 |
1.4040 |
|
1.3956 |
1.3815 |
2.0994 |
2.1966 |
3.7291 |
2.1845 |
3.1499 |
3.1806 |
| C6 |
1.3243 |
2.2895 |
2.8055 |
2.3730 |
1.3956 |
| 2.5429 |
3.4820 |
3.4952 |
3.2442 |
1.0875 |
4.5092 |
4.4243 |
| N7 |
3.6909 |
4.0048 |
3.5821 |
2.3025 |
1.3815 |
2.5429 |
|
1.3051 |
2.2674 |
5.0892 |
2.9206 |
2.1034 |
3.2316 |
| C8 |
4.3904 |
4.3089 |
3.4902 |
2.1843 |
2.0994 |
3.4820 |
1.3051 |
|
1.3828 |
5.3442 |
4.0876 |
1.0805 |
2.1557 |
| N9 |
4.0058 |
3.5169 |
2.4242 |
1.3606 |
2.1966 |
3.4952 |
2.2674 |
1.3828 |
| 4.4390 |
4.3799 |
2.1549 |
1.0091 |
| H10 |
2.0587 |
1.0849 |
2.0488 |
3.1825 |
3.7291 |
3.2442 |
5.0892 |
5.3442 |
4.4390 |
| 4.1187 |
6.3932 |
4.8405 |
| H11 |
2.0655 |
3.2699 |
3.8918 |
3.3893 |
2.1845 |
1.0875 |
2.9206 |
4.0876 |
4.3799 |
4.1187 |
| 5.0162 |
5.3541 |
| H12 |
5.4654 |
5.3726 |
4.4813 |
3.2138 |
3.1499 |
4.5092 |
2.1034 |
1.0805 |
2.1549 |
6.3932 |
5.0162 |
| 2.5722 |
| H13 |
4.7751 |
4.0603 |
2.7994 |
2.1220 |
3.1806 |
4.4243 |
3.2316 |
2.1557 |
1.0091 |
4.8405 |
5.3541 |
2.5722 |
|
Maximum atom distance is 6.3932Å
between atoms H10 and H12.
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
| atom1 |
atom2 |
atom3 |
angle |
|
atom1 |
atom2 |
atom3 |
angle |
|
N1 |
C2 |
N3 |
129.053 |
|
N1 |
C6 |
C5 |
119.762 |
|
C2 |
N1 |
C6 |
117.687 |
|
C2 |
N3 |
C4 |
111.375 |
|
N3 |
C4 |
C5 |
126.216 |
|
N3 |
C4 |
N9 |
128.575 |
|
C4 |
C5 |
C6 |
115.907 |
|
C4 |
C5 |
N7 |
111.498 |
|
C4 |
N9 |
C8 |
105.535 |
|
C5 |
C4 |
N9 |
105.209 |
|
C5 |
N7 |
C8 |
102.747 |
|
C6 |
C5 |
N7 |
132.595 |
|
N7 |
C8 |
N9 |
115.011 |
|
Calculated Bond Angles (degrees) (Involving Hydrogens)
| atom1 |
atom2 |
atom3 |
angle |
|
atom1 |
atom2 |
atom3 |
angle |
|
N1 |
C2 |
H10 |
114.941 |
|
N1 |
C6 |
H11 |
117.496 |
|
N3 |
C2 |
H10 |
116.006 |
|
C4 |
N9 |
H13 |
126.497 |
|
C5 |
C6 |
H11 |
122.742 |
|
N7 |
C8 |
H12 |
123.424 |
|
C8 |
N9 |
H13 |
127.968 |
|
N9 |
C8 |
H12 |
121.565 |
For information on specific bond angles or dihedrals
see the geometry comparison page in section
Comparisons > Geometry > Bonds, angles.