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Geometry for C5H4N4 (purine) 1A CS

1910171554
InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) INChIKey=KDCGOANMDULRCW-UHFFFAOYSA-N

B3PW91/6-31G*


Point group is Cs
Atom Internal Principal
x (Å) y (Å) z (Å)   a (Å) b (Å) c (Å)
N1 -1.8153 -1.2529 0.0000   2.0974 0.6826 0.0000
C2 -2.0998 0.0678 0.0000   1.9931 -0.6644 0.0000
N3 -1.2690 1.1015 0.0000   0.9018 -1.4179 0.0000
C4 0.0000 0.7035 0.0000   -0.2008 -0.6742 0.0000
C5 0.4525 -0.6257 0.0000   -0.2551 0.7288 0.0000
C6 -0.5393 -1.6075 0.0000   0.9758 1.3866 0.0000
N7 1.8325 -0.6907 0.0000   -1.5591 1.1850 0.0000
C8 2.1800 0.5673 0.0000   -2.2513 0.0786 0.0000
N9 1.1279 1.4645 0.0000   -1.4990 -1.0816 0.0000
H10 -3.1578 0.3079 0.0000   2.9386 -1.1965 0.0000
H11 -0.3139 -2.6713 0.0000   1.0633 2.4706 0.0000
H12 3.2078 0.9009 0.0000   -3.3315 0.0523 0.0000
H13 1.1717 2.4726 0.0000   -1.8287 -2.0353 0.0000
Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N1 1.3510 2.4169 2.6688 2.3530 1.3243 3.6909 4.3904 4.0058 2.0587 2.0655 5.4654 4.7751
C2 1.3510 1.3262 2.1939 2.6449 2.2895 4.0048 4.3089 3.5169 1.0849 3.2699 5.3726 4.0603
N3 2.4169 1.3262 1.3300 2.4386 2.8055 3.5821 3.4902 2.4242 2.0488 3.8918 4.4813 2.7994
C4 2.6688 2.1939 1.3300 1.4040 2.3730 2.3025 2.1843 1.3606 3.1825 3.3893 3.2138 2.1220
C5 2.3530 2.6449 2.4386 1.4040 1.3956 1.3815 2.0994 2.1966 3.7291 2.1845 3.1499 3.1806
C6 1.3243 2.2895 2.8055 2.3730 1.3956 2.5429 3.4820 3.4952 3.2442 1.0875 4.5092 4.4243
N7 3.6909 4.0048 3.5821 2.3025 1.3815 2.5429 1.3051 2.2674 5.0892 2.9206 2.1034 3.2316
C8 4.3904 4.3089 3.4902 2.1843 2.0994 3.4820 1.3051 1.3828 5.3442 4.0876 1.0805 2.1557
N9 4.0058 3.5169 2.4242 1.3606 2.1966 3.4952 2.2674 1.3828 4.4390 4.3799 2.1549 1.0091
H10 2.0587 1.0849 2.0488 3.1825 3.7291 3.2442 5.0892 5.3442 4.4390 4.1187 6.3932 4.8405
H11 2.0655 3.2699 3.8918 3.3893 2.1845 1.0875 2.9206 4.0876 4.3799 4.1187 5.0162 5.3541
H12 5.4654 5.3726 4.4813 3.2138 3.1499 4.5092 2.1034 1.0805 2.1549 6.3932 5.0162 2.5722
H13 4.7751 4.0603 2.7994 2.1220 3.1806 4.4243 3.2316 2.1557 1.0091 4.8405 5.3541 2.5722
Maximum atom distance is 6.3932Å between atoms H10 and H12.
picture of purine
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 N3 129.053 N1 C6 C5 119.762
C2 N1 C6 117.687 C2 N3 C4 111.375
N3 C4 C5 126.216 N3 C4 N9 128.575
C4 C5 C6 115.907 C4 C5 N7 111.498
C4 N9 C8 105.535 C5 C4 N9 105.209
C5 N7 C8 102.747 C6 C5 N7 132.595
N7 C8 N9 115.011
Calculated Bond Angles (degrees) (Involving Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 H10 114.941 N1 C6 H11 117.496
N3 C2 H10 116.006 C4 N9 H13 126.497
C5 C6 H11 122.742 N7 C8 H12 123.424
C8 N9 H13 127.968 N9 C8 H12 121.565

For information on specific bond angles or dihedrals see the geometry comparison page in section Comparisons > Geometry > Bonds, angles.