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Computational Chemistry Comparison and Benchmark DataBase
Release 22 (May 2022) Standard Reference Database 101
National Institute of Standards and Technology
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You are here: Home > Geometry > Calculated > Calculated geometry OR Calculated > Geometry > Calculated geometry
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Geometry for C5H4N4 (purine)
1A CS
1910171554
InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) INChIKey=KDCGOANMDULRCW-UHFFFAOYSA-N
MP2/CEP-31G*
Point group is Cs
| Atom |
Internal |
|
Principal |
| x (Å) |
y (Å) |
z (Å) |
|
a (Å) |
b (Å) |
c (Å) |
| N1 |
-1.8356 |
-1.2832 |
0.0000 |
|
2.1302 |
0.6916 |
0.0000 |
| C2 |
-2.1260 |
0.0596 |
0.0000 |
|
2.0161 |
-0.6775 |
0.0000 |
| N3 |
-1.2888 |
1.1157 |
0.0000 |
|
0.9070 |
-1.4433 |
0.0000 |
| C4 |
0.0000 |
0.7173 |
0.0000 |
|
-0.2094 |
-0.6861 |
0.0000 |
| C5 |
0.4675 |
-0.6340 |
0.0000 |
|
-0.2621 |
0.7428 |
0.0000 |
| C6 |
-0.5394 |
-1.6411 |
0.0000 |
|
0.9949 |
1.4122 |
0.0000 |
| N7 |
1.8604 |
-0.6976 |
0.0000 |
|
-1.5758 |
1.2102 |
0.0000 |
| C8 |
2.1984 |
0.5914 |
0.0000 |
|
-2.2753 |
0.0759 |
0.0000 |
| N9 |
1.1345 |
1.4943 |
0.0000 |
|
-1.5213 |
-1.0981 |
0.0000 |
| H10 |
-3.1926 |
0.2994 |
0.0000 |
|
2.9662 |
-1.2181 |
0.0000 |
| H11 |
-0.3096 |
-2.7131 |
0.0000 |
|
1.0880 |
2.5047 |
0.0000 |
| H12 |
3.2323 |
0.9357 |
0.0000 |
|
-3.3646 |
0.0484 |
0.0000 |
| H13 |
1.1731 |
2.5146 |
0.0000 |
|
-1.8559 |
-2.0627 |
0.0000 |
Atom - Atom Distances (Å)
| |
N1 |
C2 |
N3 |
C4 |
C5 |
C6 |
N7 |
C8 |
N9 |
H10 |
H11 |
H12 |
H13 |
| N1 |
|
1.3739 |
2.4604 |
2.7150 |
2.3928 |
1.3447 |
3.7421 |
4.4482 |
4.0665 |
2.0847 |
2.0912 |
5.5323 |
4.8451 |
| C2 |
1.3739 |
|
1.3477 |
2.2254 |
2.6847 |
2.3259 |
4.0577 |
4.3570 |
3.5623 |
1.0932 |
3.3147 |
5.4295 |
4.1123 |
| N3 |
2.4604 |
1.3477 |
|
1.3490 |
2.4791 |
2.8569 |
3.6340 |
3.5263 |
2.4527 |
2.0714 |
3.9521 |
4.5247 |
2.8316 |
| C4 |
2.7150 |
2.2254 |
1.3490 |
|
1.4298 |
2.4193 |
2.3373 |
2.2020 |
1.3751 |
3.2198 |
3.4444 |
3.2397 |
2.1462 |
| C5 |
2.3928 |
2.6847 |
2.4791 |
1.4298 |
|
1.4241 |
1.3944 |
2.1207 |
2.2304 |
3.7772 |
2.2196 |
3.1793 |
3.2266 |
| C6 |
1.3447 |
2.3259 |
2.8569 |
2.4193 |
1.4241 |
| 2.5786 |
3.5327 |
3.5543 |
3.2871 |
1.0964 |
4.5679 |
4.4947 |
| N7 |
3.7421 |
4.0577 |
3.6340 |
2.3373 |
1.3944 |
2.5786 |
|
1.3326 |
2.3090 |
5.1504 |
2.9616 |
2.1330 |
3.2849 |
| C8 |
4.4482 |
4.3570 |
3.5263 |
2.2020 |
2.1207 |
3.5327 |
1.3326 |
|
1.3953 |
5.3988 |
4.1485 |
1.0897 |
2.1793 |
| N9 |
4.0665 |
3.5623 |
2.4527 |
1.3751 |
2.2304 |
3.5543 |
2.3090 |
1.3953 |
| 4.4891 |
4.4484 |
2.1709 |
1.0210 |
| H10 |
2.0847 |
1.0932 |
2.0714 |
3.2198 |
3.7772 |
3.2871 |
5.1504 |
5.3988 |
4.4891 |
| 4.1697 |
6.4563 |
4.8955 |
| H11 |
2.0912 |
3.3147 |
3.9521 |
3.4444 |
2.2196 |
1.0964 |
2.9616 |
4.1485 |
4.4484 |
4.1697 |
| 5.0852 |
5.4339 |
| H12 |
5.5323 |
5.4295 |
4.5247 |
3.2397 |
3.1793 |
4.5679 |
2.1330 |
1.0897 |
2.1709 |
6.4563 |
5.0852 |
| 2.5948 |
| H13 |
4.8451 |
4.1123 |
2.8316 |
2.1462 |
3.2266 |
4.4947 |
3.2849 |
2.1793 |
1.0210 |
4.8955 |
5.4339 |
2.5948 |
|
Maximum atom distance is 6.4563Å
between atoms H10 and H12.
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
| atom1 |
atom2 |
atom3 |
angle |
|
atom1 |
atom2 |
atom3 |
angle |
|
N1 |
C2 |
N3 |
129.388 |
|
N1 |
C6 |
C5 |
119.556 |
|
C2 |
N1 |
C6 |
117.642 |
|
C2 |
N3 |
C4 |
111.227 |
|
N3 |
C4 |
C5 |
126.262 |
|
N3 |
C4 |
N9 |
128.415 |
|
C4 |
C5 |
C6 |
115.924 |
|
C4 |
C5 |
N7 |
111.701 |
|
C4 |
N9 |
C8 |
105.272 |
|
C5 |
C4 |
N9 |
105.323 |
|
C5 |
N7 |
C8 |
102.073 |
|
C6 |
C5 |
N7 |
132.376 |
|
N7 |
C8 |
N9 |
115.632 |
|
Calculated Bond Angles (degrees) (Involving Hydrogens)
| atom1 |
atom2 |
atom3 |
angle |
|
atom1 |
atom2 |
atom3 |
angle |
|
N1 |
C2 |
H10 |
114.877 |
|
N1 |
C6 |
H11 |
117.535 |
|
N3 |
C2 |
H10 |
115.735 |
|
C4 |
N9 |
H13 |
126.573 |
|
C5 |
C6 |
H11 |
122.909 |
|
N7 |
C8 |
H12 |
123.105 |
|
C8 |
N9 |
H13 |
128.156 |
|
N9 |
C8 |
H12 |
121.263 |
For information on specific bond angles or dihedrals
see the geometry comparison page in section
Comparisons > Geometry > Bonds, angles.