return to home page Computational Chemistry Comparison and Benchmark DataBase Release 22 (May 2022) Standard Reference Database 101 National Institute of Standards and Technology
You are here: Home > Geometry > Calculated > Calculated geometry OR Calculated > Geometry > Calculated geometry

Geometry for C5H4N4 (purine) 1A CS

1910171554
InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) INChIKey=KDCGOANMDULRCW-UHFFFAOYSA-N

MP2/CEP-31G*


Point group is Cs
Atom Internal Principal
x (Å) y (Å) z (Å)   a (Å) b (Å) c (Å)
N1 -1.8356 -1.2832 0.0000   2.1302 0.6916 0.0000
C2 -2.1260 0.0596 0.0000   2.0161 -0.6775 0.0000
N3 -1.2888 1.1157 0.0000   0.9070 -1.4433 0.0000
C4 0.0000 0.7173 0.0000   -0.2094 -0.6861 0.0000
C5 0.4675 -0.6340 0.0000   -0.2621 0.7428 0.0000
C6 -0.5394 -1.6411 0.0000   0.9949 1.4122 0.0000
N7 1.8604 -0.6976 0.0000   -1.5758 1.2102 0.0000
C8 2.1984 0.5914 0.0000   -2.2753 0.0759 0.0000
N9 1.1345 1.4943 0.0000   -1.5213 -1.0981 0.0000
H10 -3.1926 0.2994 0.0000   2.9662 -1.2181 0.0000
H11 -0.3096 -2.7131 0.0000   1.0880 2.5047 0.0000
H12 3.2323 0.9357 0.0000   -3.3646 0.0484 0.0000
H13 1.1731 2.5146 0.0000   -1.8559 -2.0627 0.0000
Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N1 1.3739 2.4604 2.7150 2.3928 1.3447 3.7421 4.4482 4.0665 2.0847 2.0912 5.5323 4.8451
C2 1.3739 1.3477 2.2254 2.6847 2.3259 4.0577 4.3570 3.5623 1.0932 3.3147 5.4295 4.1123
N3 2.4604 1.3477 1.3490 2.4791 2.8569 3.6340 3.5263 2.4527 2.0714 3.9521 4.5247 2.8316
C4 2.7150 2.2254 1.3490 1.4298 2.4193 2.3373 2.2020 1.3751 3.2198 3.4444 3.2397 2.1462
C5 2.3928 2.6847 2.4791 1.4298 1.4241 1.3944 2.1207 2.2304 3.7772 2.2196 3.1793 3.2266
C6 1.3447 2.3259 2.8569 2.4193 1.4241 2.5786 3.5327 3.5543 3.2871 1.0964 4.5679 4.4947
N7 3.7421 4.0577 3.6340 2.3373 1.3944 2.5786 1.3326 2.3090 5.1504 2.9616 2.1330 3.2849
C8 4.4482 4.3570 3.5263 2.2020 2.1207 3.5327 1.3326 1.3953 5.3988 4.1485 1.0897 2.1793
N9 4.0665 3.5623 2.4527 1.3751 2.2304 3.5543 2.3090 1.3953 4.4891 4.4484 2.1709 1.0210
H10 2.0847 1.0932 2.0714 3.2198 3.7772 3.2871 5.1504 5.3988 4.4891 4.1697 6.4563 4.8955
H11 2.0912 3.3147 3.9521 3.4444 2.2196 1.0964 2.9616 4.1485 4.4484 4.1697 5.0852 5.4339
H12 5.5323 5.4295 4.5247 3.2397 3.1793 4.5679 2.1330 1.0897 2.1709 6.4563 5.0852 2.5948
H13 4.8451 4.1123 2.8316 2.1462 3.2266 4.4947 3.2849 2.1793 1.0210 4.8955 5.4339 2.5948
Maximum atom distance is 6.4563Å between atoms H10 and H12.
picture of purine
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 N3 129.388 N1 C6 C5 119.556
C2 N1 C6 117.642 C2 N3 C4 111.227
N3 C4 C5 126.262 N3 C4 N9 128.415
C4 C5 C6 115.924 C4 C5 N7 111.701
C4 N9 C8 105.272 C5 C4 N9 105.323
C5 N7 C8 102.073 C6 C5 N7 132.376
N7 C8 N9 115.632
Calculated Bond Angles (degrees) (Involving Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 H10 114.877 N1 C6 H11 117.535
N3 C2 H10 115.735 C4 N9 H13 126.573
C5 C6 H11 122.909 N7 C8 H12 123.105
C8 N9 H13 128.156 N9 C8 H12 121.263

For information on specific bond angles or dihedrals see the geometry comparison page in section Comparisons > Geometry > Bonds, angles.