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Geometry for HO2CCHNH2CH2OH (Serine) 1A C1

1910171554
InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m0/s1 INChIKey=MTCFGRXMJLQNBG-UWTATZPHSA-N

QCISD/aug-cc-pVDZ


Point group is C1
Atom Internal Principal
x (Å) y (Å) z (Å)   a (Å) b (Å) c (Å)
C1 0.8018 -0.5338 0.0184   -0.8007 -0.5355 -0.0194
O2 2.0765 -0.3300 -0.3925   -2.0724 -0.3406 0.4047
O3 0.4401 -1.5517 0.5807   -0.4412 -1.5444 -0.5991
C4 -0.0948 0.6707 -0.3091   0.0957 0.6665 0.3178
C5 -1.5275 0.4237 0.1921   1.5249 0.4301 -0.1985
O6 -2.1276 -0.7167 -0.4009   2.1325 -0.7171 0.3734
N7 0.4072 1.9381 0.2331   -0.4136 1.9402 -0.2023
H8 2.5872 -1.1214 -0.1650   -2.5831 -1.1300 0.1701
H9 -0.1272 0.7533 -1.4103   0.1369 0.7336 1.4198
H10 -1.5195 0.3556 1.2989   1.5081 0.3777 -1.3060
H11 -2.1343 1.2985 -0.0882   2.1319 1.3023 0.0893
H12 -1.6802 -1.4967 -0.0504   1.6840 -1.4931 0.0155
H13 1.3105 2.1819 -0.1683   -1.3142 2.1761 0.2098
H14 0.5242 1.8858 1.2453   -0.5388 1.9020 -1.2141
Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C1 1.3547 1.2179 1.5369 2.5244 2.9649 2.5124 1.8885 2.1356 2.7963 3.4626 2.6631 2.7693 2.7271
O2 1.3547 2.2622 2.3922 3.7280 4.2218 2.8848 0.9690 2.6581 4.0326 4.5250 3.9485 2.6357 3.1625
O3 1.2179 2.2622 2.4530 2.8151 2.8730 3.5073 2.3133 3.0983 2.8274 3.8986 2.2129 3.9062 3.5022
C4 1.5369 2.3922 2.4530 1.5378 2.4629 1.4671 3.2289 1.1048 2.1714 2.1453 2.6978 2.0684 2.0678
C5 2.5244 3.7280 2.8151 1.5378 1.4186 2.4573 4.4097 2.1534 1.1089 1.1010 1.9416 3.3579 2.7307
O6 2.9649 4.2218 2.8730 2.4629 1.4186 3.7250 4.7380 2.6799 2.0998 2.0393 0.9651 4.5030 4.0639
N7 2.5124 2.8848 3.5073 1.4671 2.4573 3.7250 3.7778 2.0953 2.7116 2.6404 4.0293 1.0181 1.0203
H8 1.8885 0.9690 2.3133 3.2289 4.4097 4.7380 3.7778 3.5260 4.6032 5.3061 4.2854 3.5414 3.9100
H9 2.1356 2.6581 3.0983 1.1048 2.1534 2.6799 2.0953 3.5260 3.0719 2.4645 3.0535 2.3771 2.9596
H10 2.7963 4.0326 2.8274 2.1714 1.1089 2.0998 2.7116 4.6032 3.0719 1.7863 2.2972 3.6739 2.5537
H11 3.4626 4.5250 3.8986 2.1453 1.1010 2.0393 2.6404 5.3061 2.4645 1.7863 2.8320 3.5572 3.0317
H12 2.6631 3.9485 2.2129 2.6978 1.9416 0.9651 4.0293 4.2854 3.0535 2.2972 2.8320 4.7424 4.2402
H13 2.7693 2.6357 3.9062 2.0684 3.3579 4.5030 1.0181 3.5414 2.3771 3.6739 3.5572 4.7424 1.6444
H14 2.7271 3.1625 3.5022 2.0678 2.7307 4.0639 1.0203 3.9100 2.9596 2.5537 3.0317 4.2402 1.6444
Maximum atom distance is 5.3061Å between atoms H8 and H11.
picture of Serine
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
C1 C4 C5 110.374 C1 C4 N7 113.499
O2 C1 O3 123.041 O2 C1 C4 111.492
O3 C1 C4 125.466 C4 C5 O6 112.772
C5 C4 N7 109.703
Calculated Bond Angles (degrees) (Involving Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
C1 O2 H8 107.569 C1 C4 H9 106.740
C4 C5 H10 109.177 C4 C5 H11 107.632
C4 N7 H13 111.393 C4 N7 H14 111.197
C5 C4 H9 108.034 C5 O6 H12 107.560
O6 C5 H10 111.772 O6 C5 H11 107.406
N7 C4 H9 108.291 H10 C5 H11 107.867
H13 N7 H14 107.554

For information on specific bond angles or dihedrals see the geometry comparison page in section Comparisons > Geometry > Bonds, angles.