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Computational Chemistry Comparison and Benchmark DataBase
Release 22 (May 2022) Standard Reference Database 101
National Institute of Standards and Technology
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You are here: Home > Geometry > Calculated > Calculated geometry OR Calculated > Geometry > Calculated geometry
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Geometry for C5H4N4 (purine)
1A CS
1910171554
InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) INChIKey=KDCGOANMDULRCW-UHFFFAOYSA-N
MP2=FULL/STO-3G
Point group is Cs
| Atom |
Internal |
|
Principal |
| x (Å) |
y (Å) |
z (Å) |
|
a (Å) |
b (Å) |
c (Å) |
| N1 |
-1.8671 |
-1.3264 |
0.0000 |
|
2.1690 |
0.7355 |
0.0000 |
| C2 |
-2.1708 |
0.0490 |
0.0000 |
|
2.0657 |
-0.6691 |
0.0000 |
| N3 |
-1.3292 |
1.1327 |
0.0000 |
|
0.9488 |
-1.4662 |
0.0000 |
| C4 |
0.0000 |
0.7232 |
0.0000 |
|
-0.2073 |
-0.6928 |
0.0000 |
| C5 |
0.4695 |
-0.6365 |
0.0000 |
|
-0.2674 |
0.7444 |
0.0000 |
| C6 |
-0.5408 |
-1.6537 |
0.0000 |
|
0.9921 |
1.4294 |
0.0000 |
| N7 |
1.9048 |
-0.7026 |
0.0000 |
|
-1.6235 |
1.2191 |
0.0000 |
| C8 |
2.2476 |
0.6117 |
0.0000 |
|
-2.3287 |
0.0582 |
0.0000 |
| N9 |
1.1532 |
1.5189 |
0.0000 |
|
-1.5401 |
-1.1246 |
0.0000 |
| H10 |
-3.2507 |
0.2829 |
0.0000 |
|
3.0332 |
-1.2027 |
0.0000 |
| H11 |
-0.2920 |
-2.7303 |
0.0000 |
|
1.0623 |
2.5321 |
0.0000 |
| H12 |
3.2877 |
0.9688 |
0.0000 |
|
-3.4274 |
0.0142 |
0.0000 |
| H13 |
1.1900 |
2.5587 |
0.0000 |
|
-1.8734 |
-2.1103 |
0.0000 |
Atom - Atom Distances (Å)
| |
N1 |
C2 |
N3 |
C4 |
C5 |
C6 |
N7 |
C8 |
N9 |
H10 |
H11 |
H12 |
H13 |
| N1 |
|
1.4085 |
2.5172 |
2.7725 |
2.4364 |
1.3662 |
3.8232 |
4.5483 |
4.1494 |
2.1222 |
2.1100 |
5.6427 |
4.9437 |
| C2 |
1.4085 |
|
1.3722 |
2.2731 |
2.7279 |
2.3572 |
4.1444 |
4.4542 |
3.6345 |
1.1049 |
3.3548 |
5.5354 |
4.1945 |
| N3 |
2.5172 |
1.3722 |
|
1.3909 |
2.5230 |
2.8959 |
3.7186 |
3.6146 |
2.5122 |
2.1010 |
3.9999 |
4.6198 |
2.8948 |
| C4 |
2.7725 |
2.2731 |
1.3909 |
|
1.4384 |
2.4377 |
2.3794 |
2.2504 |
1.4011 |
3.2804 |
3.4658 |
3.2968 |
2.1875 |
| C5 |
2.4364 |
2.7279 |
2.5230 |
1.4384 |
|
1.4337 |
1.4368 |
2.1725 |
2.2612 |
3.8321 |
2.2280 |
3.2433 |
3.2754 |
| C6 |
1.3662 |
2.3572 |
2.8959 |
2.4377 |
1.4337 |
| 2.6240 |
3.5927 |
3.5965 |
3.3308 |
1.1050 |
4.6405 |
4.5541 |
| N7 |
3.8232 |
4.1444 |
3.7186 |
2.3794 |
1.4368 |
2.6240 |
|
1.3583 |
2.3453 |
5.2489 |
2.9896 |
2.1693 |
3.3388 |
| C8 |
4.5483 |
4.4542 |
3.6146 |
2.2504 |
2.1725 |
3.5927 |
1.3583 |
|
1.4216 |
5.5082 |
4.1975 |
1.0996 |
2.2158 |
| N9 |
4.1494 |
3.6345 |
2.5122 |
1.4011 |
2.2612 |
3.5965 |
2.3453 |
1.4216 |
| 4.5740 |
4.4883 |
2.2043 |
1.0405 |
| H10 |
2.1222 |
1.1049 |
2.1010 |
3.2804 |
3.8321 |
3.3308 |
5.2489 |
5.5082 |
4.5740 |
| 4.2230 |
6.5742 |
4.9899 |
| H11 |
2.1100 |
3.3548 |
3.9999 |
3.4658 |
2.2280 |
1.1050 |
2.9896 |
4.1975 |
4.4883 |
4.2230 |
| 5.1475 |
5.4927 |
| H12 |
5.6427 |
5.5354 |
4.6198 |
3.2968 |
3.2433 |
4.6405 |
2.1693 |
1.0996 |
2.2043 |
6.5742 |
5.1475 |
| 2.6322 |
| H13 |
4.9437 |
4.1945 |
2.8948 |
2.1875 |
3.2754 |
4.5541 |
3.3388 |
2.2158 |
1.0405 |
4.9899 |
5.4927 |
2.6322 |
|
Maximum atom distance is 6.5742Å
between atoms H10 and H12.
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
| atom1 |
atom2 |
atom3 |
angle |
|
atom1 |
atom2 |
atom3 |
angle |
|
N1 |
C2 |
N3 |
129.717 |
|
N1 |
C6 |
C5 |
120.938 |
|
C2 |
N1 |
C6 |
116.316 |
|
C2 |
N3 |
C4 |
110.706 |
|
N3 |
C4 |
C5 |
126.176 |
|
N3 |
C4 |
N9 |
128.268 |
|
C4 |
C5 |
C6 |
116.146 |
|
C4 |
C5 |
N7 |
111.690 |
|
C4 |
N9 |
C8 |
105.737 |
|
C5 |
C4 |
N9 |
105.556 |
|
C5 |
N7 |
C8 |
101.979 |
|
C6 |
C5 |
N7 |
132.164 |
|
N7 |
C8 |
N9 |
115.037 |
|
Calculated Bond Angles (degrees) (Involving Hydrogens)
| atom1 |
atom2 |
atom3 |
angle |
|
atom1 |
atom2 |
atom3 |
angle |
|
N1 |
C2 |
H10 |
114.672 |
|
N1 |
C6 |
H11 |
116.878 |
|
N3 |
C2 |
H10 |
115.611 |
|
C4 |
N9 |
H13 |
126.635 |
|
C5 |
C6 |
H11 |
122.184 |
|
N7 |
C8 |
H12 |
123.568 |
|
C8 |
N9 |
H13 |
127.628 |
|
N9 |
C8 |
H12 |
121.395 |
For information on specific bond angles or dihedrals
see the geometry comparison page in section
Comparisons > Geometry > Bonds, angles.