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Geometry for C5H4N4 (purine) 1A CS

1910171554
InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) INChIKey=KDCGOANMDULRCW-UHFFFAOYSA-N

MP2=FULL/STO-3G


Point group is Cs
Atom Internal Principal
x (Å) y (Å) z (Å)   a (Å) b (Å) c (Å)
N1 -1.8671 -1.3264 0.0000   2.1690 0.7355 0.0000
C2 -2.1708 0.0490 0.0000   2.0657 -0.6691 0.0000
N3 -1.3292 1.1327 0.0000   0.9488 -1.4662 0.0000
C4 0.0000 0.7232 0.0000   -0.2073 -0.6928 0.0000
C5 0.4695 -0.6365 0.0000   -0.2674 0.7444 0.0000
C6 -0.5408 -1.6537 0.0000   0.9921 1.4294 0.0000
N7 1.9048 -0.7026 0.0000   -1.6235 1.2191 0.0000
C8 2.2476 0.6117 0.0000   -2.3287 0.0582 0.0000
N9 1.1532 1.5189 0.0000   -1.5401 -1.1246 0.0000
H10 -3.2507 0.2829 0.0000   3.0332 -1.2027 0.0000
H11 -0.2920 -2.7303 0.0000   1.0623 2.5321 0.0000
H12 3.2877 0.9688 0.0000   -3.4274 0.0142 0.0000
H13 1.1900 2.5587 0.0000   -1.8734 -2.1103 0.0000
Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N1 1.4085 2.5172 2.7725 2.4364 1.3662 3.8232 4.5483 4.1494 2.1222 2.1100 5.6427 4.9437
C2 1.4085 1.3722 2.2731 2.7279 2.3572 4.1444 4.4542 3.6345 1.1049 3.3548 5.5354 4.1945
N3 2.5172 1.3722 1.3909 2.5230 2.8959 3.7186 3.6146 2.5122 2.1010 3.9999 4.6198 2.8948
C4 2.7725 2.2731 1.3909 1.4384 2.4377 2.3794 2.2504 1.4011 3.2804 3.4658 3.2968 2.1875
C5 2.4364 2.7279 2.5230 1.4384 1.4337 1.4368 2.1725 2.2612 3.8321 2.2280 3.2433 3.2754
C6 1.3662 2.3572 2.8959 2.4377 1.4337 2.6240 3.5927 3.5965 3.3308 1.1050 4.6405 4.5541
N7 3.8232 4.1444 3.7186 2.3794 1.4368 2.6240 1.3583 2.3453 5.2489 2.9896 2.1693 3.3388
C8 4.5483 4.4542 3.6146 2.2504 2.1725 3.5927 1.3583 1.4216 5.5082 4.1975 1.0996 2.2158
N9 4.1494 3.6345 2.5122 1.4011 2.2612 3.5965 2.3453 1.4216 4.5740 4.4883 2.2043 1.0405
H10 2.1222 1.1049 2.1010 3.2804 3.8321 3.3308 5.2489 5.5082 4.5740 4.2230 6.5742 4.9899
H11 2.1100 3.3548 3.9999 3.4658 2.2280 1.1050 2.9896 4.1975 4.4883 4.2230 5.1475 5.4927
H12 5.6427 5.5354 4.6198 3.2968 3.2433 4.6405 2.1693 1.0996 2.2043 6.5742 5.1475 2.6322
H13 4.9437 4.1945 2.8948 2.1875 3.2754 4.5541 3.3388 2.2158 1.0405 4.9899 5.4927 2.6322
Maximum atom distance is 6.5742Å between atoms H10 and H12.
picture of purine
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 N3 129.717 N1 C6 C5 120.938
C2 N1 C6 116.316 C2 N3 C4 110.706
N3 C4 C5 126.176 N3 C4 N9 128.268
C4 C5 C6 116.146 C4 C5 N7 111.690
C4 N9 C8 105.737 C5 C4 N9 105.556
C5 N7 C8 101.979 C6 C5 N7 132.164
N7 C8 N9 115.037
Calculated Bond Angles (degrees) (Involving Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 H10 114.672 N1 C6 H11 116.878
N3 C2 H10 115.611 C4 N9 H13 126.635
C5 C6 H11 122.184 N7 C8 H12 123.568
C8 N9 H13 127.628 N9 C8 H12 121.395

For information on specific bond angles or dihedrals see the geometry comparison page in section Comparisons > Geometry > Bonds, angles.