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Computational Chemistry Comparison and Benchmark DataBase
Release 22 (May 2022) Standard Reference Database 101
National Institute of Standards and Technology
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You are here: Home > Geometry > Calculated > Calculated geometry OR Calculated > Geometry > Calculated geometry
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Geometry for C5H4N4 (purine)
1A CS
1910171554
InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) INChIKey=KDCGOANMDULRCW-UHFFFAOYSA-N
HF/6-31G**
Point group is Cs
| Atom |
Internal |
|
Principal |
| x (Å) |
y (Å) |
z (Å) |
|
a (Å) |
b (Å) |
c (Å) |
| N1 |
-1.8026 |
-1.2423 |
0.0000 |
|
2.0785 |
0.6875 |
0.0000 |
| C2 |
-2.0952 |
0.0664 |
0.0000 |
|
1.9927 |
-0.6508 |
0.0000 |
| N3 |
-1.2669 |
1.0831 |
0.0000 |
|
0.9127 |
-1.3947 |
0.0000 |
| C4 |
0.0000 |
0.6949 |
0.0000 |
|
-0.1947 |
-0.6670 |
0.0000 |
| C5 |
0.4441 |
-0.6174 |
0.0000 |
|
-0.2533 |
0.7171 |
0.0000 |
| C6 |
-0.5387 |
-1.5963 |
0.0000 |
|
0.9644 |
1.3814 |
0.0000 |
| N7 |
1.8251 |
-0.6724 |
0.0000 |
|
-1.5636 |
1.1568 |
0.0000 |
| C8 |
2.1773 |
0.5634 |
0.0000 |
|
-2.2480 |
0.0692 |
0.0000 |
| N9 |
1.1254 |
1.4530 |
0.0000 |
|
-1.4875 |
-1.0794 |
0.0000 |
| H10 |
-3.1443 |
0.3034 |
0.0000 |
|
2.9333 |
-1.1723 |
0.0000 |
| H11 |
-0.3176 |
-2.6508 |
0.0000 |
|
1.0477 |
2.4557 |
0.0000 |
| H12 |
3.1995 |
0.8875 |
0.0000 |
|
-3.3200 |
0.0445 |
0.0000 |
| H13 |
1.1713 |
2.4444 |
0.0000 |
|
-1.8093 |
-2.0183 |
0.0000 |
Atom - Atom Distances (Å)
| |
N1 |
C2 |
N3 |
C4 |
C5 |
C6 |
N7 |
C8 |
N9 |
H10 |
H11 |
H12 |
H13 |
| N1 |
|
1.3411 |
2.3864 |
2.6462 |
2.3320 |
1.3125 |
3.6722 |
4.3704 |
3.9797 |
2.0468 |
2.0467 |
5.4367 |
4.7367 |
| C2 |
1.3411 |
|
1.3114 |
2.1875 |
2.6298 |
2.2776 |
3.9893 |
4.3014 |
3.5064 |
1.0755 |
3.2471 |
5.3580 |
4.0405 |
| N3 |
2.3864 |
1.3114 |
|
1.3250 |
2.4123 |
2.7766 |
3.5555 |
3.4832 |
2.4207 |
2.0328 |
3.8527 |
4.4706 |
2.7925 |
| C4 |
2.6462 |
2.1875 |
1.3250 |
|
1.3854 |
2.3536 |
2.2804 |
2.1813 |
1.3569 |
3.1685 |
3.3607 |
3.2053 |
2.1055 |
| C5 |
2.3320 |
2.6298 |
2.4123 |
1.3854 |
|
1.3871 |
1.3821 |
2.0972 |
2.1796 |
3.7046 |
2.1714 |
3.1396 |
3.1470 |
| C6 |
1.3125 |
2.2776 |
2.7766 |
2.3536 |
1.3871 |
| 2.5380 |
3.4700 |
3.4738 |
3.2245 |
1.0775 |
4.4881 |
4.3877 |
| N7 |
3.6722 |
3.9893 |
3.5555 |
2.2804 |
1.3821 |
2.5380 |
|
1.2850 |
2.2375 |
5.0642 |
2.9164 |
2.0790 |
3.1846 |
| C8 |
4.3704 |
4.3014 |
3.4832 |
2.1813 |
2.0972 |
3.4700 |
1.2850 |
|
1.3776 |
5.3279 |
4.0689 |
1.0723 |
2.1332 |
| N9 |
3.9797 |
3.5064 |
2.4207 |
1.3569 |
2.1796 |
3.4738 |
2.2375 |
1.3776 |
| 4.4217 |
4.3501 |
2.1497 |
0.9925 |
| H10 |
2.0468 |
1.0755 |
2.0328 |
3.1685 |
3.7046 |
3.2245 |
5.0642 |
5.3279 |
4.4217 |
| 4.0887 |
6.3706 |
4.8175 |
| H11 |
2.0467 |
3.2471 |
3.8527 |
3.3607 |
2.1714 |
1.0775 |
2.9164 |
4.0689 |
4.3501 |
4.0887 |
| 4.9890 |
5.3084 |
| H12 |
5.4367 |
5.3580 |
4.4706 |
3.2053 |
3.1396 |
4.4881 |
2.0790 |
1.0723 |
2.1497 |
6.3706 |
4.9890 |
| 2.5569 |
| H13 |
4.7367 |
4.0405 |
2.7925 |
2.1055 |
3.1470 |
4.3877 |
3.1846 |
2.1332 |
0.9925 |
4.8175 |
5.3084 |
2.5569 |
|
Maximum atom distance is 6.3706Å
between atoms H10 and H12.
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
| atom1 |
atom2 |
atom3 |
angle |
|
atom1 |
atom2 |
atom3 |
angle |
|
N1 |
C2 |
N3 |
128.225 |
|
N1 |
C6 |
C5 |
119.470 |
|
C2 |
N1 |
C6 |
118.247 |
|
C2 |
N3 |
C4 |
112.135 |
|
N3 |
C4 |
C5 |
125.733 |
|
N3 |
C4 |
N9 |
128.998 |
|
C4 |
C5 |
C6 |
116.189 |
|
C4 |
C5 |
N7 |
110.974 |
|
C4 |
N9 |
C8 |
105.815 |
|
C5 |
C4 |
N9 |
105.269 |
|
C5 |
N7 |
C8 |
103.632 |
|
C6 |
C5 |
N7 |
132.837 |
|
N7 |
C8 |
N9 |
114.311 |
|
Calculated Bond Angles (degrees) (Involving Hydrogens)
| atom1 |
atom2 |
atom3 |
angle |
|
atom1 |
atom2 |
atom3 |
angle |
|
N1 |
C2 |
H10 |
115.333 |
|
N1 |
C6 |
H11 |
117.486 |
|
N3 |
C2 |
H10 |
116.442 |
|
C4 |
N9 |
H13 |
126.614 |
|
C5 |
C6 |
H11 |
123.044 |
|
N7 |
C8 |
H12 |
123.501 |
|
C8 |
N9 |
H13 |
127.571 |
|
N9 |
C8 |
H12 |
122.188 |
For information on specific bond angles or dihedrals
see the geometry comparison page in section
Comparisons > Geometry > Bonds, angles.