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Geometry for C5H4N4 (purine) 1A CS

1910171554
InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) INChIKey=KDCGOANMDULRCW-UHFFFAOYSA-N

HF/6-31G**


Point group is Cs
Atom Internal Principal
x (Å) y (Å) z (Å)   a (Å) b (Å) c (Å)
N1 -1.8026 -1.2423 0.0000   2.0785 0.6875 0.0000
C2 -2.0952 0.0664 0.0000   1.9927 -0.6508 0.0000
N3 -1.2669 1.0831 0.0000   0.9127 -1.3947 0.0000
C4 0.0000 0.6949 0.0000   -0.1947 -0.6670 0.0000
C5 0.4441 -0.6174 0.0000   -0.2533 0.7171 0.0000
C6 -0.5387 -1.5963 0.0000   0.9644 1.3814 0.0000
N7 1.8251 -0.6724 0.0000   -1.5636 1.1568 0.0000
C8 2.1773 0.5634 0.0000   -2.2480 0.0692 0.0000
N9 1.1254 1.4530 0.0000   -1.4875 -1.0794 0.0000
H10 -3.1443 0.3034 0.0000   2.9333 -1.1723 0.0000
H11 -0.3176 -2.6508 0.0000   1.0477 2.4557 0.0000
H12 3.1995 0.8875 0.0000   -3.3200 0.0445 0.0000
H13 1.1713 2.4444 0.0000   -1.8093 -2.0183 0.0000
Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N1 1.3411 2.3864 2.6462 2.3320 1.3125 3.6722 4.3704 3.9797 2.0468 2.0467 5.4367 4.7367
C2 1.3411 1.3114 2.1875 2.6298 2.2776 3.9893 4.3014 3.5064 1.0755 3.2471 5.3580 4.0405
N3 2.3864 1.3114 1.3250 2.4123 2.7766 3.5555 3.4832 2.4207 2.0328 3.8527 4.4706 2.7925
C4 2.6462 2.1875 1.3250 1.3854 2.3536 2.2804 2.1813 1.3569 3.1685 3.3607 3.2053 2.1055
C5 2.3320 2.6298 2.4123 1.3854 1.3871 1.3821 2.0972 2.1796 3.7046 2.1714 3.1396 3.1470
C6 1.3125 2.2776 2.7766 2.3536 1.3871 2.5380 3.4700 3.4738 3.2245 1.0775 4.4881 4.3877
N7 3.6722 3.9893 3.5555 2.2804 1.3821 2.5380 1.2850 2.2375 5.0642 2.9164 2.0790 3.1846
C8 4.3704 4.3014 3.4832 2.1813 2.0972 3.4700 1.2850 1.3776 5.3279 4.0689 1.0723 2.1332
N9 3.9797 3.5064 2.4207 1.3569 2.1796 3.4738 2.2375 1.3776 4.4217 4.3501 2.1497 0.9925
H10 2.0468 1.0755 2.0328 3.1685 3.7046 3.2245 5.0642 5.3279 4.4217 4.0887 6.3706 4.8175
H11 2.0467 3.2471 3.8527 3.3607 2.1714 1.0775 2.9164 4.0689 4.3501 4.0887 4.9890 5.3084
H12 5.4367 5.3580 4.4706 3.2053 3.1396 4.4881 2.0790 1.0723 2.1497 6.3706 4.9890 2.5569
H13 4.7367 4.0405 2.7925 2.1055 3.1470 4.3877 3.1846 2.1332 0.9925 4.8175 5.3084 2.5569
Maximum atom distance is 6.3706Å between atoms H10 and H12.
picture of purine
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 N3 128.225 N1 C6 C5 119.470
C2 N1 C6 118.247 C2 N3 C4 112.135
N3 C4 C5 125.733 N3 C4 N9 128.998
C4 C5 C6 116.189 C4 C5 N7 110.974
C4 N9 C8 105.815 C5 C4 N9 105.269
C5 N7 C8 103.632 C6 C5 N7 132.837
N7 C8 N9 114.311
Calculated Bond Angles (degrees) (Involving Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 H10 115.333 N1 C6 H11 117.486
N3 C2 H10 116.442 C4 N9 H13 126.614
C5 C6 H11 123.044 N7 C8 H12 123.501
C8 N9 H13 127.571 N9 C8 H12 122.188

For information on specific bond angles or dihedrals see the geometry comparison page in section Comparisons > Geometry > Bonds, angles.