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Computational Chemistry Comparison and Benchmark DataBase
Release 22 (May 2022) Standard Reference Database 101
National Institute of Standards and Technology
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You are here: Home > Geometry > Calculated > Calculated geometry OR Calculated > Geometry > Calculated geometry
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Geometry for C5H4N4 (purine)
1A CS
1910171554
InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) INChIKey=KDCGOANMDULRCW-UHFFFAOYSA-N
HF/6-311G*
Point group is Cs
| Atom |
Internal |
|
Principal |
| x (Å) |
y (Å) |
z (Å) |
|
a (Å) |
b (Å) |
c (Å) |
| N1 |
-1.8033 |
-1.2419 |
0.0000 |
|
2.0794 |
0.6858 |
0.0000 |
| C2 |
-2.0950 |
0.0669 |
0.0000 |
|
1.9920 |
-0.6523 |
0.0000 |
| N3 |
-1.2667 |
1.0830 |
0.0000 |
|
0.9118 |
-1.3951 |
0.0000 |
| C4 |
0.0000 |
0.6946 |
0.0000 |
|
-0.1950 |
-0.6666 |
0.0000 |
| C5 |
0.4437 |
-0.6174 |
0.0000 |
|
-0.2525 |
0.7172 |
0.0000 |
| C6 |
-0.5399 |
-1.5953 |
0.0000 |
|
0.9660 |
1.3796 |
0.0000 |
| N7 |
1.8251 |
-0.6724 |
0.0000 |
|
-1.5629 |
1.1576 |
0.0000 |
| C8 |
2.1784 |
0.5627 |
0.0000 |
|
-2.2488 |
0.0714 |
0.0000 |
| N9 |
1.1262 |
1.4527 |
0.0000 |
|
-1.4887 |
-1.0782 |
0.0000 |
| H10 |
-3.1437 |
0.3043 |
0.0000 |
|
2.9319 |
-1.1745 |
0.0000 |
| H11 |
-0.3205 |
-2.6501 |
0.0000 |
|
1.0515 |
2.4536 |
0.0000 |
| H12 |
3.2012 |
0.8854 |
0.0000 |
|
-3.3210 |
0.0488 |
0.0000 |
| H13 |
1.1715 |
2.4421 |
0.0000 |
|
-1.8099 |
-2.0151 |
0.0000 |
Atom - Atom Distances (Å)
| |
N1 |
C2 |
N3 |
C4 |
C5 |
C6 |
N7 |
C8 |
N9 |
H10 |
H11 |
H12 |
H13 |
| N1 |
|
1.3410 |
2.3861 |
2.6461 |
2.3321 |
1.3119 |
3.6728 |
4.3716 |
3.9803 |
2.0463 |
2.0449 |
5.4378 |
4.7351 |
| C2 |
1.3410 |
|
1.3110 |
2.1870 |
2.6293 |
2.2763 |
3.9892 |
4.3021 |
3.5066 |
1.0752 |
3.2451 |
5.3591 |
4.0388 |
| N3 |
2.3861 |
1.3110 |
|
1.3249 |
2.4118 |
2.7752 |
3.5553 |
3.4842 |
2.4213 |
2.0322 |
3.8511 |
4.4722 |
2.7914 |
| C4 |
2.6461 |
2.1870 |
1.3249 |
|
1.3850 |
2.3527 |
2.2802 |
2.1824 |
1.3576 |
3.1678 |
3.3599 |
3.2068 |
2.1039 |
| C5 |
2.3321 |
2.6293 |
2.4118 |
1.3850 |
|
1.3870 |
1.3825 |
2.0981 |
2.1797 |
3.7039 |
2.1715 |
3.1404 |
3.1449 |
| C6 |
1.3119 |
2.2763 |
2.7752 |
2.3527 |
1.3870 |
| 2.5387 |
3.4708 |
3.4736 |
3.2231 |
1.0773 |
4.4888 |
4.3852 |
| N7 |
3.6728 |
3.9892 |
3.5553 |
2.2802 |
1.3825 |
2.5387 |
|
1.2846 |
2.2370 |
5.0638 |
2.9180 |
2.0785 |
3.1823 |
| C8 |
4.3716 |
4.3021 |
3.4842 |
2.1824 |
2.0981 |
3.4708 |
1.2846 |
|
1.3781 |
5.3284 |
4.0702 |
1.0724 |
2.1321 |
| N9 |
3.9803 |
3.5066 |
2.4213 |
1.3576 |
2.1797 |
3.4736 |
2.2370 |
1.3781 |
| 4.4216 |
4.3503 |
2.1511 |
0.9905 |
| H10 |
2.0463 |
1.0752 |
2.0322 |
3.1678 |
3.7039 |
3.2231 |
5.0638 |
5.3284 |
4.4216 |
| 4.0864 |
6.3714 |
4.8157 |
| H11 |
2.0449 |
3.2451 |
3.8511 |
3.3599 |
2.1715 |
1.0773 |
2.9180 |
4.0702 |
4.3503 |
4.0864 |
| 4.9901 |
5.3062 |
| H12 |
5.4378 |
5.3591 |
4.4722 |
3.2068 |
3.1404 |
4.4888 |
2.0785 |
1.0724 |
2.1511 |
6.3714 |
4.9901 |
| 2.5579 |
| H13 |
4.7351 |
4.0388 |
2.7914 |
2.1039 |
3.1449 |
4.3852 |
3.1823 |
2.1321 |
0.9905 |
4.8157 |
5.3062 |
2.5579 |
|
Maximum atom distance is 6.3714Å
between atoms H10 and H12.
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
| atom1 |
atom2 |
atom3 |
angle |
|
atom1 |
atom2 |
atom3 |
angle |
|
N1 |
C2 |
N3 |
128.248 |
|
N1 |
C6 |
C5 |
119.539 |
|
C2 |
N1 |
C6 |
118.193 |
|
C2 |
N3 |
C4 |
112.137 |
|
N3 |
C4 |
C5 |
125.733 |
|
N3 |
C4 |
N9 |
129.003 |
|
C4 |
C5 |
C6 |
116.151 |
|
C4 |
C5 |
N7 |
110.960 |
|
C4 |
N9 |
C8 |
105.828 |
|
C5 |
C4 |
N9 |
105.264 |
|
C5 |
N7 |
C8 |
103.689 |
|
C6 |
C5 |
N7 |
132.889 |
|
N7 |
C8 |
N9 |
114.259 |
|
Calculated Bond Angles (degrees) (Involving Hydrogens)
| atom1 |
atom2 |
atom3 |
angle |
|
atom1 |
atom2 |
atom3 |
angle |
|
N1 |
C2 |
H10 |
115.319 |
|
N1 |
C6 |
H11 |
117.379 |
|
N3 |
C2 |
H10 |
116.434 |
|
C4 |
N9 |
H13 |
126.568 |
|
C5 |
C6 |
H11 |
123.082 |
|
N7 |
C8 |
H12 |
123.476 |
|
C8 |
N9 |
H13 |
127.604 |
|
N9 |
C8 |
H12 |
122.265 |
For information on specific bond angles or dihedrals
see the geometry comparison page in section
Comparisons > Geometry > Bonds, angles.