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Geometry for C5H4N4 (purine) 1A CS

1910171554
InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) INChIKey=KDCGOANMDULRCW-UHFFFAOYSA-N

HF/6-311G*


Point group is Cs
Atom Internal Principal
x (Å) y (Å) z (Å)   a (Å) b (Å) c (Å)
N1 -1.8033 -1.2419 0.0000   2.0794 0.6858 0.0000
C2 -2.0950 0.0669 0.0000   1.9920 -0.6523 0.0000
N3 -1.2667 1.0830 0.0000   0.9118 -1.3951 0.0000
C4 0.0000 0.6946 0.0000   -0.1950 -0.6666 0.0000
C5 0.4437 -0.6174 0.0000   -0.2525 0.7172 0.0000
C6 -0.5399 -1.5953 0.0000   0.9660 1.3796 0.0000
N7 1.8251 -0.6724 0.0000   -1.5629 1.1576 0.0000
C8 2.1784 0.5627 0.0000   -2.2488 0.0714 0.0000
N9 1.1262 1.4527 0.0000   -1.4887 -1.0782 0.0000
H10 -3.1437 0.3043 0.0000   2.9319 -1.1745 0.0000
H11 -0.3205 -2.6501 0.0000   1.0515 2.4536 0.0000
H12 3.2012 0.8854 0.0000   -3.3210 0.0488 0.0000
H13 1.1715 2.4421 0.0000   -1.8099 -2.0151 0.0000
Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N1 1.3410 2.3861 2.6461 2.3321 1.3119 3.6728 4.3716 3.9803 2.0463 2.0449 5.4378 4.7351
C2 1.3410 1.3110 2.1870 2.6293 2.2763 3.9892 4.3021 3.5066 1.0752 3.2451 5.3591 4.0388
N3 2.3861 1.3110 1.3249 2.4118 2.7752 3.5553 3.4842 2.4213 2.0322 3.8511 4.4722 2.7914
C4 2.6461 2.1870 1.3249 1.3850 2.3527 2.2802 2.1824 1.3576 3.1678 3.3599 3.2068 2.1039
C5 2.3321 2.6293 2.4118 1.3850 1.3870 1.3825 2.0981 2.1797 3.7039 2.1715 3.1404 3.1449
C6 1.3119 2.2763 2.7752 2.3527 1.3870 2.5387 3.4708 3.4736 3.2231 1.0773 4.4888 4.3852
N7 3.6728 3.9892 3.5553 2.2802 1.3825 2.5387 1.2846 2.2370 5.0638 2.9180 2.0785 3.1823
C8 4.3716 4.3021 3.4842 2.1824 2.0981 3.4708 1.2846 1.3781 5.3284 4.0702 1.0724 2.1321
N9 3.9803 3.5066 2.4213 1.3576 2.1797 3.4736 2.2370 1.3781 4.4216 4.3503 2.1511 0.9905
H10 2.0463 1.0752 2.0322 3.1678 3.7039 3.2231 5.0638 5.3284 4.4216 4.0864 6.3714 4.8157
H11 2.0449 3.2451 3.8511 3.3599 2.1715 1.0773 2.9180 4.0702 4.3503 4.0864 4.9901 5.3062
H12 5.4378 5.3591 4.4722 3.2068 3.1404 4.4888 2.0785 1.0724 2.1511 6.3714 4.9901 2.5579
H13 4.7351 4.0388 2.7914 2.1039 3.1449 4.3852 3.1823 2.1321 0.9905 4.8157 5.3062 2.5579
Maximum atom distance is 6.3714Å between atoms H10 and H12.
picture of purine
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 N3 128.248 N1 C6 C5 119.539
C2 N1 C6 118.193 C2 N3 C4 112.137
N3 C4 C5 125.733 N3 C4 N9 129.003
C4 C5 C6 116.151 C4 C5 N7 110.960
C4 N9 C8 105.828 C5 C4 N9 105.264
C5 N7 C8 103.689 C6 C5 N7 132.889
N7 C8 N9 114.259
Calculated Bond Angles (degrees) (Involving Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 H10 115.319 N1 C6 H11 117.379
N3 C2 H10 116.434 C4 N9 H13 126.568
C5 C6 H11 123.082 N7 C8 H12 123.476
C8 N9 H13 127.604 N9 C8 H12 122.265

For information on specific bond angles or dihedrals see the geometry comparison page in section Comparisons > Geometry > Bonds, angles.