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Geometry for HO2CCHNH2CH2OH (Serine) 1A C1

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InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m0/s1 INChIKey=MTCFGRXMJLQNBG-UWTATZPHSA-N

B3PW91/6-311G*


Point group is C1
Atom Internal Principal
x (Å) y (Å) z (Å)   a (Å) b (Å) c (Å)
C1 0.7768 -0.5438 -0.0013   0.7768 -0.5437 -0.0150
O2 2.0568 -0.3466 -0.3559   2.0539 -0.3415 -0.3772
O3 0.4013 -1.5553 0.5411   0.4056 -1.5625 0.5165
C4 -0.0879 0.6760 -0.3095   -0.0904 0.6802 -0.2995
C5 -1.5142 0.4438 0.1874   -1.5126 0.4411 0.2057
O6 -2.1048 -0.6976 -0.3781   -2.1078 -0.6926 -0.3705
N7 0.4388 1.9236 0.2257   0.4406 1.9204 0.2484
H8 2.5548 -1.1409 -0.1198   2.5537 -1.1389 -0.1561
H9 -0.1270 0.7644 -1.4012   -0.1384 0.7834 -1.3896
H10 -1.5083 0.3927 1.2870   -1.4979 0.3749 1.3044
H11 -2.1139 1.3081 -0.1016   -2.1147 1.3092 -0.0666
H12 -1.6516 -1.4614 -0.0073   -1.6516 -1.4613 -0.0139
H13 1.3368 2.1467 -0.1838   1.3353 2.1492 -0.1653
H14 0.5632 1.8649 1.2299   0.5732 1.8480 1.2506
Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C1 1.3428 1.2075 1.5267 2.5019 2.9102 2.5008 1.8793 2.1185 2.7854 3.4345 2.5960 2.7543 2.7136
O2 1.3428 2.2374 2.3765 3.6976 4.1764 2.8478 0.9667 2.6639 3.9945 4.4942 3.8880 2.6009 3.1042
O3 1.2075 2.2374 2.4375 2.7911 2.8037 3.4933 2.2904 3.0712 2.8280 3.8650 2.1269 3.8866 3.4926
C4 1.5267 2.3765 2.4375 1.5281 2.4412 1.4561 3.2126 1.0960 2.1556 2.1325 2.6655 2.0515 2.0512
C5 2.5019 3.6976 2.7911 1.5281 1.4041 2.4506 4.3775 2.1333 1.1007 1.0910 1.9201 3.3415 2.7243
O6 2.9102 4.1764 2.8037 2.4412 1.4041 3.7020 4.6877 2.6638 2.0777 2.0247 0.9624 4.4691 4.0337
N7 2.5008 2.8478 3.4933 1.4561 2.4506 3.7020 3.7400 2.0763 2.6947 2.6462 3.9852 1.0119 1.0136
H8 1.8793 0.9667 2.2904 3.2126 4.3775 4.6877 3.7400 3.5305 4.5650 5.2721 4.2200 3.5066 3.8500
H9 2.1185 2.6639 3.0712 1.0960 2.1333 2.6638 2.0763 3.5305 3.0451 2.4357 3.0367 2.3528 2.9344
H10 2.7854 3.9945 2.8280 2.1556 1.1007 2.0777 2.6947 4.5650 3.0451 1.7700 2.2657 3.6517 2.5421
H11 3.4345 4.4942 3.8650 2.1325 1.0910 2.0247 2.6462 5.2721 2.4357 1.7700 2.8094 3.5521 3.0414
H12 2.5960 3.8880 2.1269 2.6655 1.9201 0.9624 3.9852 4.2200 3.0367 2.2657 2.8094 4.6883 4.1834
H13 2.7543 2.6009 3.8866 2.0515 3.3415 4.4691 1.0119 3.5066 2.3528 3.6517 3.5521 4.6883 1.6360
H14 2.7136 3.1042 3.4926 2.0512 2.7243 4.0337 1.0136 3.8500 2.9344 2.5421 3.0414 4.1834 1.6360
Maximum atom distance is 5.2721Å between atoms H8 and H11.
picture of Serine
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
C1 C4 C5 109.974 C1 C4 N7 113.923
O2 C1 O3 122.552 O2 C1 C4 111.669
O3 C1 C4 125.718 C4 C5 O6 112.651
C5 C4 N7 110.379
Calculated Bond Angles (degrees) (Involving Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
C1 O2 H8 107.810 C1 C4 H9 106.603
C4 C5 H10 109.084 C4 C5 H11 107.852
C4 N7 H13 111.171 C4 N7 H14 111.038
C5 C4 H9 107.631 C5 O6 H12 106.973
O6 C5 H10 111.516 O6 C5 H11 107.823
N7 C4 H9 108.057 H10 C5 H11 107.722
H13 N7 H14 107.744

For information on specific bond angles or dihedrals see the geometry comparison page in section Comparisons > Geometry > Bonds, angles.