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Geometry for C5H4N4 (purine) 1A CS

1910171554
InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) INChIKey=KDCGOANMDULRCW-UHFFFAOYSA-N

B1B95/6-31G


Point group is Cs
Atom Internal Principal
x (Å) y (Å) z (Å)   a (Å) b (Å) c (Å)
N1 -1.8121 -1.2675 0.0000   2.0962 0.7045 0.0000
C2 -2.1250 0.0555 0.0000   2.0229 -0.6531 0.0000
N3 -1.2814 1.0890 0.0000   0.9219 -1.4065 0.0000
C4 0.0000 0.7033 0.0000   -0.1985 -0.6747 0.0000
C5 0.4546 -0.6262 0.0000   -0.2593 0.7291 0.0000
C6 -0.5256 -1.6175 0.0000   0.9608 1.4034 0.0000
N7 1.8434 -0.6774 0.0000   -1.5772 1.1702 0.0000
C8 2.1932 0.5905 0.0000   -2.2707 0.0526 0.0000
N9 1.1241 1.4765 0.0000   -1.4951 -1.0992 0.0000
H10 -3.1772 0.2859 0.0000   2.9673 -1.1711 0.0000
H11 -0.2897 -2.6720 0.0000   1.0321 2.4816 0.0000
H12 3.2123 0.9271 0.0000   -3.3434 0.0174 0.0000
H13 1.1545 2.4808 0.0000   -1.8078 -2.0540 0.0000
Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N1 1.3596 2.4156 2.6773 2.3557 1.3332 3.7028 4.4153 4.0188 2.0680 2.0713 5.4828 4.7802
C2 1.3596 1.3340 2.2215 2.6681 2.3145 4.0355 4.3511 3.5462 1.0771 3.2875 5.4080 4.0788
N3 2.4156 1.3340 1.3382 2.4405 2.8101 3.5895 3.5102 2.4365 2.0589 3.8896 4.4967 2.8055
C4 2.6773 2.2215 1.3382 1.4051 2.3796 2.3031 2.1961 1.3643 3.2045 3.3877 3.2201 2.1195
C5 2.3557 2.6681 2.4405 1.4051 1.3941 1.3897 2.1221 2.2068 3.7445 2.1769 3.1651 3.1849
C6 1.3332 2.3145 2.8101 2.3796 1.3941 2.5488 3.5025 3.5064 3.2640 1.0806 4.5218 4.4293
N7 3.7028 4.0355 3.5895 2.3031 1.3897 2.5488 1.3153 2.2708 5.1121 2.9204 2.1091 3.2324
C8 4.4153 4.3511 3.5102 2.1961 2.1221 3.5025 1.3153 1.3885 5.3790 4.0998 1.0733 2.1568
N9 4.0188 3.5462 2.4365 1.3643 2.2068 3.5064 2.2708 1.3885 4.4630 4.3828 2.1593 1.0047
H10 2.0680 1.0771 2.0589 3.2045 3.7445 3.2640 5.1121 5.3790 4.4630 4.1336 6.4216 4.8560
H11 2.0713 3.2875 3.8896 3.3877 2.1769 1.0806 2.9204 4.0998 4.3828 4.1336 5.0217 5.3513
H12 5.4828 5.4080 4.4967 3.2201 3.1651 4.5218 2.1091 1.0733 2.1593 6.4216 5.0217 2.5785
H13 4.7802 4.0788 2.8055 2.1195 3.1849 4.4293 3.2324 2.1568 1.0047 4.8560 5.3513 2.5785
Maximum atom distance is 6.4216Å between atoms H10 and H12.
picture of purine
Calculated Bond Angles (degrees) (Ignoring Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 N3 127.473 N1 C6 C5 119.460
C2 N1 C6 118.523 C2 N3 C4 112.470
N3 C4 C5 125.628 N3 C4 N9 128.724
C4 C5 C6 116.446 C4 C5 N7 110.984
C4 N9 C8 105.826 C5 C4 N9 105.648
C5 N7 C8 103.314 C6 C5 N7 132.570
N7 C8 N9 114.228
Calculated Bond Angles (degrees) (Involving Hydrogens)
atom1 atom2 atom3 angle         atom1 atom2 atom3 angle
N1 C2 H10 115.653 N1 C6 H11 117.832
N3 C2 H10 116.874 C4 N9 H13 126.259
C5 C6 H11 122.708 N7 C8 H12 123.696
C8 N9 H13 127.916 N9 C8 H12 122.076

For information on specific bond angles or dihedrals see the geometry comparison page in section Comparisons > Geometry > Bonds, angles.